Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax paradoxus |
| Strain | strain MEDvA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | mine spoil; soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1135217 bp
Thymine Count
1134728 bp
Guanine Count
2318338 bp
Cytosine Count
2318226 bp
Genome Length
6906509 bp
Protein-coding Genes
6027 genes
Non-Coding Genes
52 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ribonuclease hii | RT97_07720 | Not Available | Positive | 1690789 - 1691508 | 25712.5 |
| rrna methyltransferase | RT97_07725 | Not Available | Positive | 1691517 - 1692302 | 27327.9 |
| carbamoyl-phosphate synthase | RT97_07730 | Not Available | Positive | 1692441 - 1693634 | 42465.9 |
| carbamoyl phosphate synthase large subunit | RT97_07735 | Not Available | Positive | 1693627 - 1696875 | 117493.0 |
| 3-deoxy-d-manno-oct-2-ulosonic acid (kdo) hydroxylase family protein | RT97_07740 | Not Available | Positive | 1696884 - 1697753 | 32768.1 |
| transcription elongation factor grea | RT97_07745 | Not Available | Positive | 1697818 - 1698294 | 17190.4 |
| hypothetical protein | RT97_07750 | Not Available | Positive | 1698306 - 1698722 | 15083.0 |
| glycosyltransferase | RT97_07755 | Not Available | Negative | 1698760 - 1699515 | 29009.7 |
| rna-binding protein | RT97_07760 | Not Available | Negative | 1699521 - 1700000 | 17760.9 |
| ribosomal rna large subunit methyltransferase e | RT97_07765 | Not Available | Positive | 1700089 - 1700757 | 24250.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
