Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax paradoxus |
| Strain | strain MEDvA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | mine spoil; soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1135217 bp
Thymine Count
1134728 bp
Guanine Count
2318338 bp
Cytosine Count
2318226 bp
Genome Length
6906509 bp
Protein-coding Genes
6027 genes
Non-Coding Genes
52 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ribonuclease r | RT97_07620 | Not Available | Positive | 1669156 - 1671453 | 84592.7 |
| 3-oxoacyl-acp reductase | RT97_07625 | Not Available | Positive | 1671502 - 1672269 | 26769.3 |
| carbohydrate kinase | RT97_07630 | Not Available | Negative | 1672277 - 1673737 | 49055.8 |
| hypothetical protein | RT97_07635 | Not Available | Positive | 1673768 - 1674196 | 15784.9 |
| amino acid dehydrogenase | RT97_07640 | Not Available | Negative | 1674186 - 1675439 | 44814.1 |
| amidase | RT97_07645 | Not Available | Negative | 1675495 - 1676820 | 45959.9 |
| 30s ribosomal protein s2 | RT97_07650 | Not Available | Positive | 1677033 - 1677788 | 27547.3 |
| elongation factor ts | RT97_07655 | Not Available | Positive | 1677870 - 1678793 | 32516.1 |
| uridylate kinase | RT97_07660 | Not Available | Positive | 1678890 - 1679612 | 25370.0 |
| ribosome-recycling factor | RT97_07665 | Not Available | Positive | 1679624 - 1680184 | 20628.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
