Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax paradoxus |
| Strain | strain MEDvA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | mine spoil; soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1135217 bp
Thymine Count
1134728 bp
Guanine Count
2318338 bp
Cytosine Count
2318226 bp
Genome Length
6906509 bp
Protein-coding Genes
6027 genes
Non-Coding Genes
52 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 2fe-2s ferredoxin | RT97_07305 | Not Available | Negative | 1590047 - 1590415 | 13422.8 |
| had family hydrolase | RT97_07310 | Not Available | Negative | 1590426 - 1591100 | 24611.4 |
| ribosomal large subunit pseudouridine synthase c | RT97_07315 | Not Available | Negative | 1591093 - 1592190 | 39479.8 |
| ribonuclease e | RT97_07320 | Not Available | Positive | 1592739 - 1595993 | 118479.0 |
| heme biosynthesis protein hemy | RT97_07325 | Not Available | Negative | 1596313 - 1597596 | 46874.7 |
| uroporphyrin-iii methyltransferase | RT97_07330 | Not Available | Negative | 1597699 - 1598799 | 39256.2 |
| uroporphyrinogen iii synthase | RT97_07335 | Not Available | Negative | 1598796 - 1599578 | 27936.2 |
| porphobilinogen deaminase | RT97_07340 | Not Available | Negative | 1599595 - 1600521 | 33304.0 |
| phosphoenolpyruvate carboxylase | RT97_07345 | Not Available | Positive | 1600605 - 1603448 | 104874.0 |
| hypothetical protein | RT97_07350 | Not Available | Positive | 1603618 - 1603836 | 7968.81 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
