Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax paradoxus |
| Strain | strain MEDvA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | mine spoil; soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1135217 bp
Thymine Count
1134728 bp
Guanine Count
2318338 bp
Cytosine Count
2318226 bp
Genome Length
6906509 bp
Protein-coding Genes
6027 genes
Non-Coding Genes
52 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| succinate dehydrogenase | RT97_07055 | Not Available | Positive | 1539940 - 1540305 | 13800.5 |
| fumarate reductase | RT97_07060 | Not Available | Positive | 1540313 - 1542121 | 66000.6 |
| succinate dehydrogenase | RT97_07065 | Not Available | Positive | 1542169 - 1542870 | 26663.4 |
| hypothetical protein | RT97_07070 | Not Available | Positive | 1542893 - 1543207 | 11762.1 |
| type ii citrate synthase | RT97_07075 | Not Available | Positive | 1543232 - 1544542 | 48628.7 |
| lysr family transcriptional regulator | RT97_07080 | Not Available | Positive | 1544720 - 1545700 | 35036.9 |
| isopropylmalate isomerase | RT97_07085 | Not Available | Positive | 1545739 - 1547160 | 50700.6 |
| 3-isopropylmalate dehydratase | RT97_07090 | Not Available | Positive | 1547177 - 1547827 | 24257.1 |
| 3-isopropylmalate dehydrogenase | RT97_07095 | Not Available | Positive | 1547879 - 1548967 | 39196.2 |
| aspartate-semialdehyde dehydrogenase | RT97_07100 | Not Available | Positive | 1549055 - 1550197 | 40545.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
