Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax paradoxus |
| Strain | strain MEDvA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | mine spoil; soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1135217 bp
Thymine Count
1134728 bp
Guanine Count
2318338 bp
Cytosine Count
2318226 bp
Genome Length
6906509 bp
Protein-coding Genes
6027 genes
Non-Coding Genes
52 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Trna-ala | Not Available | Not Available | Positive | 1524169 - 1524244 | Not Available |
| hypothetical protein | RT97_07010 | Not Available | Positive | 1530156 - 1531292 | 42721.2 |
| hypothetical protein | RT97_07015 | Not Available | Positive | 1531305 - 1532162 | 31820.7 |
| bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase | RT97_07020 | Not Available | Negative | 1532244 - 1534826 | 92331.9 |
| hypothetical protein | RT97_07025 | Not Available | Negative | 1534904 - 1535473 | 20199.6 |
| aldolase | RT97_07030 | Not Available | Negative | 1535512 - 1536510 | 35098.0 |
| trans-aconitate methyltransferase | RT97_07035 | Not Available | Negative | 1536507 - 1537286 | 28999.6 |
| malate dehydrogenase | RT97_07040 | Not Available | Negative | 1537301 - 1538287 | 35161.4 |
| gntr family transcriptional regulator | RT97_07045 | Not Available | Positive | 1538469 - 1539245 | 28803.7 |
| succinate dehydrogenase | RT97_07050 | Not Available | Positive | 1539480 - 1539926 | 16599.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
