Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax paradoxus |
| Strain | strain MEDvA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | mine spoil; soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1135217 bp
Thymine Count
1134728 bp
Guanine Count
2318338 bp
Cytosine Count
2318226 bp
Genome Length
6906509 bp
Protein-coding Genes
6027 genes
Non-Coding Genes
52 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | RT97_00600 | Not Available | Positive | 116199 - 116432 | 7916.73 |
| cmp deaminase | RT97_00605 | Not Available | Positive | 116422 - 117537 | 39827.4 |
| muramoyltetrapeptide carboxypeptidase | RT97_00610 | Not Available | Positive | 117534 - 118493 | 34497.5 |
| hypothetical protein | RT97_00615 | Not Available | Negative | 118562 - 118900 | 12485.3 |
| adenylate cyclase | RT97_00620 | Not Available | Positive | 119165 - 120112 | 34126.9 |
| hypothetical protein | RT97_00625 | Not Available | Positive | 120749 - 122566 | 63800.7 |
| tat pathway signal protein | RT97_00630 | Not Available | Positive | 122589 - 124064 | 51631.2 |
| hypothetical protein | RT97_00635 | Not Available | Positive | 124199 - 124417 | 8397.07 |
| hypothetical protein | RT97_00640 | Not Available | Positive | 124697 - 125119 | 14732.1 |
| histidine kinase | RT97_00645 | Not Available | Negative | 125163 - 125531 | 13148.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
