Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax paradoxus |
| Strain | strain MEDvA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | mine spoil; soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1135217 bp
Thymine Count
1134728 bp
Guanine Count
2318338 bp
Cytosine Count
2318226 bp
Genome Length
6906509 bp
Protein-coding Genes
6027 genes
Non-Coding Genes
52 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cytidine deaminase | RT97_06770 | Not Available | Negative | 1473591 - 1474067 | 17293.6 |
| abc transporter permease | RT97_06775 | Not Available | Negative | 1474183 - 1474950 | 28070.2 |
| nitrate abc transporter atp-binding protein | RT97_06780 | Not Available | Negative | 1474961 - 1475818 | 31952.8 |
| taurine abc transporter permease | RT97_06785 | Not Available | Negative | 1475818 - 1476852 | 36398.1 |
| malic enzyme | RT97_06790 | Not Available | Negative | 1477034 - 1479337 | 82004.7 |
| hydroxylase | RT97_06795 | Not Available | Positive | 1479578 - 1480918 | 50138.9 |
| tartronate semialdehyde reductase | RT97_06800 | Not Available | Negative | 1481321 - 1482232 | 31211.1 |
| hydroxypyruvate isomerase | RT97_06805 | Not Available | Negative | 1482260 - 1483039 | 28546.3 |
| glyoxylate carboligase | RT97_06810 | Not Available | Negative | 1483061 - 1484854 | 64985.4 |
| lysr family transcriptional regulator | RT97_06815 | Not Available | Positive | 1484966 - 1485868 | 32933.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
