Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax paradoxus |
| Strain | strain MEDvA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | mine spoil; soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1135217 bp
Thymine Count
1134728 bp
Guanine Count
2318338 bp
Cytosine Count
2318226 bp
Genome Length
6906509 bp
Protein-coding Genes
6027 genes
Non-Coding Genes
52 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| chorismate mutase | RT97_00550 | Not Available | Positive | 108665 - 109030 | 13848.4 |
| abc transporter substrate-binding protein | RT97_00555 | Not Available | Positive | 109027 - 109986 | 34075.3 |
| naphthalene 1,2-dioxygenase | RT97_00560 | Not Available | Positive | 110007 - 110327 | 11510.6 |
| endoribonuclease l-psp | RT97_00565 | Not Available | Positive | 110422 - 110916 | 17367.8 |
| hypothetical protein | RT97_00570 | Not Available | Negative | 110920 - 111993 | 38556.4 |
| histidine kinase | RT97_00575 | Not Available | Positive | 112055 - 113533 | 53103.9 |
| luxr family transcriptional regulator | RT97_00580 | Not Available | Positive | 113530 - 114168 | 23403.1 |
| glcg | RT97_00585 | Not Available | Positive | 114313 - 114807 | 16255.5 |
| ankyrin | RT97_00590 | Not Available | Positive | 114813 - 115508 | 24134.2 |
| transcriptional regulator | RT97_00595 | Not Available | Positive | 115553 - 116197 | 23937.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
