Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax paradoxus |
| Strain | strain MEDvA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | mine spoil; soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1135217 bp
Thymine Count
1134728 bp
Guanine Count
2318338 bp
Cytosine Count
2318226 bp
Genome Length
6906509 bp
Protein-coding Genes
6027 genes
Non-Coding Genes
52 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| xre family transcriptional regulator | RT97_06335 | Not Available | Positive | 1381782 - 1382354 | 20849.1 |
| hypothetical protein | RT97_06340 | Not Available | Positive | 1382738 - 1383292 | 20074.3 |
| relaxase | RT97_06345 | Not Available | Positive | 1383300 - 1384391 | 40948.0 |
| hypothetical protein | RT97_06350 | Not Available | Positive | 1384472 - 1384723 | 9322.37 |
| hypothetical protein | RT97_06355 | Not Available | Positive | 1385086 - 1385265 | 6464.86 |
| prevent-host-death protein | RT97_06360 | Not Available | Positive | 1385592 - 1385939 | 12577.8 |
| plasmid stabilization protein | RT97_06365 | Not Available | Positive | 1385932 - 1386312 | 14273.0 |
| restriction endonuclease subunit r | RT97_06370 | Not Available | Positive | 1386338 - 1389127 | 105160.0 |
| chromosome segregation protein smc | RT97_06380 | Not Available | Positive | 1390863 - 1392584 | 65448.0 |
| dna methyltransferase | RT97_06390 | Not Available | Positive | 1393363 - 1394838 | 55775.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
