Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax paradoxus |
| Strain | strain MEDvA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | mine spoil; soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1135217 bp
Thymine Count
1134728 bp
Guanine Count
2318338 bp
Cytosine Count
2318226 bp
Genome Length
6906509 bp
Protein-coding Genes
6027 genes
Non-Coding Genes
52 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| prevent-host-death protein | RT97_00500 | Not Available | Positive | 100629 - 100877 | 9118.08 |
| dna-binding protein | RT97_00505 | Not Available | Positive | 100889 - 101308 | 15203.2 |
| gmp synthase | RT97_00510 | Not Available | Positive | 101320 - 102936 | 58999.1 |
| hypothetical protein | RT97_00515 | Not Available | Positive | 103144 - 103398 | 8721.44 |
| 2'-5' rna ligase | RT97_00520 | Not Available | Positive | 103462 - 104067 | 21803.1 |
| hypothetical protein | RT97_00525 | Not Available | Positive | 104076 - 104597 | 18639.3 |
| lysr family transcriptional regulator | RT97_00530 | Not Available | Negative | 104733 - 105647 | 33424.9 |
| naphthalene 1,2-dioxygenase | RT97_00535 | Not Available | Positive | 105777 - 106766 | 35651.2 |
| salicylate hydroxylase | RT97_00540 | Not Available | Positive | 106796 - 108055 | 48389.4 |
| salicylate hydroxylase | RT97_00545 | Not Available | Positive | 108052 - 108537 | 18401.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
