Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax paradoxus |
| Strain | strain MEDvA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | mine spoil; soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1135217 bp
Thymine Count
1134728 bp
Guanine Count
2318338 bp
Cytosine Count
2318226 bp
Genome Length
6906509 bp
Protein-coding Genes
6027 genes
Non-Coding Genes
52 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | RT97_05535 | Not Available | Positive | 1199431 - 1200393 | 33494.0 |
| hypothetical protein | RT97_05540 | Not Available | Negative | 1200561 - 1200974 | 15290.0 |
| xre family transcriptional regulator | RT97_05545 | Not Available | Positive | 1201381 - 1201662 | 10747.1 |
| ethyl tert-butyl ether degradation protein ethd | RT97_05560 | Not Available | Negative | 1203877 - 1204572 | 26446.3 |
| nadh:flavin oxidoreductase / nadh oxidase | RT97_05565 | Not Available | Negative | 1204588 - 1205763 | 41611.7 |
| hypothetical protein | RT97_05570 | Not Available | Negative | 1205780 - 1206646 | 30399.4 |
| beta-lactamase | RT97_05575 | Not Available | Negative | 1206851 - 1207810 | 35299.0 |
| abc transporter atp-binding protein | RT97_05580 | Not Available | Negative | 1207843 - 1208553 | 25434.1 |
| sugar abc transporter atpase | RT97_05585 | Not Available | Negative | 1208571 - 1210349 | 63278.0 |
| abc transporter permease | RT97_05590 | Not Available | Negative | 1210346 - 1211269 | 31353.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
