Enterococcus raffinosus strain DSM 5633

microaerophile

Kingdom

Bacillati

Phylum

Bacillota

Class

Bacilli

Order

Lactobacillales

Family

Enterococcaceae

Genus

Enterococcus

Description

Enterococcus raffinosus strain DSM 5633 is a Gram-positive bacterium primarily found in the intestines of its host, Homo sapiens. This strain exhibits microaerophilic characteristics, meaning it thrives in environments with reduced oxygen levels, which is typical of its natural habitat within the gastrointestinal tract. Notably, Enterococcus raffinosus DSM 5633 possesses flagella, suggesting motility, which may play a role in its adaptation to intestinal conditions and its interaction with other gut microbiota. The strain is characterized by having a single replicon, indicating a streamlined genomic structure that may contribute to its efficient replication and survival in its niche. The presence of Enterococcus raffinosus in the human intestine highlights its potential role in the complex ecosystem of gut microbiota. This strain, along with other enterococci, may participate in various biological processes, including nutrient metabolism and maintaining intestinal homeostasis. Its adaptation to a microaerophilic environment and motility through flagella could influence its interactions with both the host and other microbial species in the gut, underscoring the importance of this bacterium in the broader context of human health and microbiome dynamics. The accession number for this strain is JXLA00000000.1, which provides a reference for further genomic exploration.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassBacilli
OrderLactobacillales
FamilyEnterococcaceae
GenusEnterococcus
SpeciesEnterococcus raffinosus
Strainstrain DSM 5633

Profile

Physiology
Gram staining propertiesPositive
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Enterococcus raffinosus strain DSM 5633
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsmicroaerophile
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatintestines
Biotic relationshipNot Available
Host(s)Homo sapiens
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Enterococcus raffinosus strain DSM 5633 Scaffold137, whole genome

Gene Summary

Adenine Count

1280147 bp

Thymine Count

1262789 bp

Guanine Count

839752 bp

Cytosine Count

810873 bp

Genome Length

4193576 bp

Protein-coding Genes

4043 genes

Non-Coding Genes

123 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
class v aminotransferaseRV13_GL003061Not AvailablePositive714240 - 71538241989.5
trna sulfurtransferase thiiRV13_GL003062Not AvailablePositive715417 - 71663145806.9
redox-sensing transcriptional repressor rexRV13_GL003063Not AvailablePositive716825 - 71746023545.3
valyl-trna synthetaseRV13_GL003064Not AvailablePositive717822 - 720461101024.0
folc proteinRV13_GL003065Not AvailablePositive720644 - 72195748808.9
had hydrolase, family iaRV13_GL003066Not AvailablePositive721974 - 72260323122.6
dna repair protein radcRV13_GL003067Not AvailablePositive722653 - 72334226164.7
cold shock-like protein csplaRV13_GL003068Not AvailablePositive723494 - 7236947270.31
hypothetical proteinRV13_GL003069Not AvailableNegative723786 - 72427719137.4
ribonuclease j 1RV13_GL003070Not AvailableNegative724540 - 72621661063.8

Displaying genes 761 – 770 of 4166 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

1 record
Metabolite IDMetabolite nameStructureCAS number
BASm0014039L-Lactic acidC3H6O3Chemical structure of L-Lactic acid79-33-4
Average90.0779Da
Monoisotopic90.031694058Da

Displaying 1–1 of 1 metabolites

Health Effects

No health effects information available for this bacterium.