Kocuria rhizophila strain TPW45

Gram-positiveCocciNon-motileAerobe

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Micrococcales

Family

Micrococcaceae

Genus

Kocuria

Description

Kocuria rhizophila strain TPW45 is a Gram-positive, aerobic bacterium characterized by its cocci shape and specific cell arrangement that can occur in singles or tetrads. This strain exhibits a mesophilic temperature range, indicating it thrives in moderate temperatures typically associated with many environmental habitats. One notable aspect of Kocuria rhizophila strain TPW45 is its lack of mobility; it does not possess flagella, which are often associated with motility in bacteria. This non-motility suggests that the strain relies on passive dispersal mechanisms or environmental factors for distribution within its habitats. Kocuria rhizophila strain TPW45 is free-living, meaning it does not depend on a host for survival. However, it has been identified in association with Solanum lycopersicum, commonly known as the tomato plant. This relationship may indicate a role in the plant’s ecosystem, potentially contributing to soil health or influencing plant microbiomes. The strain is characterized by a single replicon and a single membrane, which is typical for many bacteria. The accession number for Kocuria rhizophila strain TPW45 is JWTC00000000.1, which serves as a reference for further studies or genetic analysis. In summary, Kocuria rhizophila strain TPW45 exemplifies a free-living, mesophilic bacterium that may play a significant role in the ecology of its habitats, particularly in relation to plant interactions, such as those with tomato plants. Understanding its ecological contributions could provide insights into soil microbiomes and plant health.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMicrococcales
FamilyMicrococcaceae
GenusKocuria
SpeciesKocuria rhizophila
Strainstrain TPW45

Profile

Physiology
Gram staining propertiesPositive
ShapeCocci
MobilityNo
Flagellar presenceYes
Number of membranes1
Image of Kocuria rhizophila strain TPW45
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Solanum lycopersicum
Cell arrangementSingles - Tetrads
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Kocuria rhizophila strain TPW45 Contig_46, whole genome shotgun

Gene Summary

Adenine Count

394150 bp

Thymine Count

400024 bp

Guanine Count

959076 bp

Cytosine Count

948451 bp

Genome Length

2701701 bp

Protein-coding Genes

2148 genes

Non-Coding Genes

52 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
gtpase eraRK09_04150Not AvailablePositive989621 - 99067038211.7
lytr family regulatory proteinRK09_04155Not AvailablePositive990761 - 99236555487.7
2-isopropylmalate synthaseRK09_04160Not AvailablePositive992536 - 99428764568.6
dna recombination protein recoRK09_04165Not AvailablePositive994552 - 99535228583.9
udp pyrophosphate synthaseRK09_04170Not AvailablePositive995385 - 99621531054.8
diguanylate cyclaseRK09_04175Not AvailablePositive996379 - 99747339021.1
membrane proteinRK09_04180Not AvailableNegative997549 - 99816623357.3
hypothetical proteinRK09_04185Not AvailablePositive998247 - 99965949112.3
iron-sulfur cluster insertion protein erpaRK09_04190Not AvailablePositive999744 - 100011213339.5
cytochrome c oxidase subunit iiRK09_04195Not AvailablePositive1000451 - 100131432486.4

Displaying genes 791 – 800 of 2200 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.