Kocuria rhizophila strain TPW45

Gram-positiveCocciNon-motileAerobe

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Micrococcales

Family

Micrococcaceae

Genus

Kocuria

Description

Kocuria rhizophila strain TPW45 is a Gram-positive, aerobic bacterium characterized by its cocci shape and specific cell arrangement that can occur in singles or tetrads. This strain exhibits a mesophilic temperature range, indicating it thrives in moderate temperatures typically associated with many environmental habitats. One notable aspect of Kocuria rhizophila strain TPW45 is its lack of mobility; it does not possess flagella, which are often associated with motility in bacteria. This non-motility suggests that the strain relies on passive dispersal mechanisms or environmental factors for distribution within its habitats. Kocuria rhizophila strain TPW45 is free-living, meaning it does not depend on a host for survival. However, it has been identified in association with Solanum lycopersicum, commonly known as the tomato plant. This relationship may indicate a role in the plant’s ecosystem, potentially contributing to soil health or influencing plant microbiomes. The strain is characterized by a single replicon and a single membrane, which is typical for many bacteria. The accession number for Kocuria rhizophila strain TPW45 is JWTC00000000.1, which serves as a reference for further studies or genetic analysis. In summary, Kocuria rhizophila strain TPW45 exemplifies a free-living, mesophilic bacterium that may play a significant role in the ecology of its habitats, particularly in relation to plant interactions, such as those with tomato plants. Understanding its ecological contributions could provide insights into soil microbiomes and plant health.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMicrococcales
FamilyMicrococcaceae
GenusKocuria
SpeciesKocuria rhizophila
Strainstrain TPW45

Profile

Physiology
Gram staining propertiesPositive
ShapeCocci
MobilityNo
Flagellar presenceYes
Number of membranes1
Image of Kocuria rhizophila strain TPW45
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Solanum lycopersicum
Cell arrangementSingles - Tetrads
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Kocuria rhizophila strain TPW45 Contig_46, whole genome shotgun

Gene Summary

Adenine Count

394150 bp

Thymine Count

400024 bp

Guanine Count

959076 bp

Cytosine Count

948451 bp

Genome Length

2701701 bp

Protein-coding Genes

2148 genes

Non-Coding Genes

52 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
50s ribosomal protein l13RK09_08465Not AvailableNegative1986758 - 198720116284.7
pseudouridine synthaseRK09_08470Not AvailableNegative1987475 - 198842834547.1
50s ribosomal protein l17RK09_08475Not AvailableNegative1988522 - 198928626918.7
dna-directed rna polymerase subunit alphaRK09_08480Not AvailableNegative1989358 - 199037736500.9
30s ribosomal protein s11RK09_08485Not AvailableNegative1990525 - 199092914121.9
30s ribosomal protein s13RK09_08490Not AvailableNegative1990988 - 199135613781.7
50s ribosomal protein l36RK09_08495Not AvailableNegative1991515 - 19916284364.54
translation initiation factor if-1RK09_08500Not AvailableNegative1991714 - 19919358364.25
ribosomal rna large subunit methyltransferase nRK09_08505Not AvailableNegative1992144 - 199329241902.3
methionine aminopeptidaseRK09_08510Not AvailableNegative1993341 - 199417428941.4

Displaying genes 1601 – 1610 of 2200 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.