Vibrio renipiscarius strain DCR 1-4-2

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Vibrio

Description

Vibrio renipiscarius strain DCR 1-4-2 is characterized by having a single replicon, which is indicative of its genomic structure. The strain is cataloged under the accession number JTKH00000000.1, allowing for its identification and reference in genomic databases. As a member of the Vibrio genus, V. renipiscarius is likely adapted to aquatic environments, which is a common ecological niche for many Vibrio species. The presence of only one replicon suggests a streamlined genome, potentially reflecting an adaptation to its specific habitat or ecological role. This genomic characteristic may also influence its metabolic capabilities and interactions with other microorganisms within its ecosystem. Understanding the genomic traits of Vibrio renipiscarius strain DCR 1-4-2 can provide insights into its ecological interactions, such as its role in nutrient cycling or its relationships with host organisms in aquatic environments. Further research on this strain could illuminate its potential applications in biotechnology or environmental microbiology, particularly in understanding microbial dynamics in freshwater or marine systems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusVibrio
SpeciesVibrio renipiscarius
Strainstrain DCR 1-4-2

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Vibrio renipiscarius strain DCR 1-4-2
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Vibrio renipiscarius strain DCR 1-4-2 Contig30, whole genome

Gene Summary

Adenine Count

1190862 bp

Thymine Count

1186778 bp

Guanine Count

970154 bp

Cytosine Count

991893 bp

Genome Length

4339718 bp

Protein-coding Genes

3684 genes

Non-Coding Genes

116 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
atpaseOJ16_11345Not AvailableNegative2469071 - 247141688323.8
diguanylate cyclaseOJ16_11350Not AvailableNegative2471483 - 247324366348.2
radical sam proteinOJ16_11355Not AvailableNegative2473260 - 247418934499.5
glutamate synthaseOJ16_11360Not AvailablePositive2474721 - 2479268167400.0
glutamate synthaseOJ16_11365Not AvailablePositive2479268 - 248073753502.0
hypothetical proteinOJ16_11370Not AvailablePositive2480909 - 248134315870.3
trna pseudouridine synthase bOJ16_11375Not AvailableNegative2481439 - 248239235300.5
ribosome-binding factor aOJ16_11380Not AvailableNegative2482392 - 248278715140.3
translation initiation factor if-2OJ16_11385Not AvailableNegative2482899 - 248559297798.8
transcription elongation factor nusaOJ16_11390Not AvailableNegative2485614 - 248710154913.0

Displaying genes 2211 – 2220 of 3800 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.