Vibrio renipiscarius strain DCR 1-4-2

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Vibrio

Description

Vibrio renipiscarius strain DCR 1-4-2 is characterized by having a single replicon, which is indicative of its genomic structure. The strain is cataloged under the accession number JTKH00000000.1, allowing for its identification and reference in genomic databases. As a member of the Vibrio genus, V. renipiscarius is likely adapted to aquatic environments, which is a common ecological niche for many Vibrio species. The presence of only one replicon suggests a streamlined genome, potentially reflecting an adaptation to its specific habitat or ecological role. This genomic characteristic may also influence its metabolic capabilities and interactions with other microorganisms within its ecosystem. Understanding the genomic traits of Vibrio renipiscarius strain DCR 1-4-2 can provide insights into its ecological interactions, such as its role in nutrient cycling or its relationships with host organisms in aquatic environments. Further research on this strain could illuminate its potential applications in biotechnology or environmental microbiology, particularly in understanding microbial dynamics in freshwater or marine systems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusVibrio
SpeciesVibrio renipiscarius
Strainstrain DCR 1-4-2

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Vibrio renipiscarius strain DCR 1-4-2
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Vibrio renipiscarius strain DCR 1-4-2 Contig30, whole genome

Gene Summary

Adenine Count

1190862 bp

Thymine Count

1186778 bp

Guanine Count

970154 bp

Cytosine Count

991893 bp

Genome Length

4339718 bp

Protein-coding Genes

3684 genes

Non-Coding Genes

116 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
shikimate dehydrogenaseOJ16_08875Not AvailableNegative1954875 - 195570830693.9
coproporphyrinogen iii oxidaseOJ16_08880Not AvailableNegative1955778 - 195669535121.4
trna threonylcarbamoyladenosine biosynthesis protein rimnOJ16_08885Not AvailableNegative1956714 - 195727120023.9
n5-carboxyaminoimidazole ribonucleotide mutaseOJ16_08890Not AvailablePositive1957466 - 195795116542.2
phosphoribosylaminoimidazole carboxylaseOJ16_08895Not AvailablePositive1957955 - 195908840764.8
dna topoisomeraseOJ16_08900Not AvailableNegative1959139 - 195971721603.8
hypothetical proteinOJ16_08905Not AvailableNegative1959799 - 196027518469.2
dna processing protein dpraOJ16_08910Not AvailableNegative1960275 - 196139340428.8
peptidoglycan-binding proteinOJ16_08915Not AvailableNegative1961390 - 196246339647.8
peptide deformylaseOJ16_08920Not AvailablePositive1962636 - 196314519001.8

Displaying genes 1731 – 1740 of 3800 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.