Vibrio renipiscarius strain DCR 1-4-2

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Vibrio

Description

Vibrio renipiscarius strain DCR 1-4-2 is characterized by having a single replicon, which is indicative of its genomic structure. The strain is cataloged under the accession number JTKH00000000.1, allowing for its identification and reference in genomic databases. As a member of the Vibrio genus, V. renipiscarius is likely adapted to aquatic environments, which is a common ecological niche for many Vibrio species. The presence of only one replicon suggests a streamlined genome, potentially reflecting an adaptation to its specific habitat or ecological role. This genomic characteristic may also influence its metabolic capabilities and interactions with other microorganisms within its ecosystem. Understanding the genomic traits of Vibrio renipiscarius strain DCR 1-4-2 can provide insights into its ecological interactions, such as its role in nutrient cycling or its relationships with host organisms in aquatic environments. Further research on this strain could illuminate its potential applications in biotechnology or environmental microbiology, particularly in understanding microbial dynamics in freshwater or marine systems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusVibrio
SpeciesVibrio renipiscarius
Strainstrain DCR 1-4-2

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Vibrio renipiscarius strain DCR 1-4-2
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Vibrio renipiscarius strain DCR 1-4-2 Contig30, whole genome

Gene Summary

Adenine Count

1190862 bp

Thymine Count

1186778 bp

Guanine Count

970154 bp

Cytosine Count

991893 bp

Genome Length

4339718 bp

Protein-coding Genes

3684 genes

Non-Coding Genes

116 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
3',5'-cyclic-nucleotide phosphodiesteraseOJ16_07940Not AvailableNegative1756011 - 175683230627.0
dehydrogenaseOJ16_07945Not AvailableNegative1756842 - 175728216706.0
adp-ribose pyrophosphataseOJ16_07950Not AvailableNegative1757270 - 175789923978.1
outer membrane channel proteinOJ16_07955Not AvailablePositive1758130 - 175944947506.2
fis family transcriptional regulatorOJ16_07960Not AvailableNegative1759521 - 176085550037.1
lysine--trna ligaseOJ16_07965Not AvailableNegative1761164 - 176269657701.7
peptide chain release factor 2OJ16_07970Not AvailableNegative1762731 - 176363033587.0
branched-chain amino acid transporterOJ16_07975Not AvailableNegative1763991 - 176530446397.6
sam-dependent methlyltransferaseOJ16_07980Not AvailablePositive1765614 - 176633326435.8
atp-dependent rna helicase srmbOJ16_07985Not AvailablePositive1766479 - 176771446703.7

Displaying genes 1551 – 1560 of 3800 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.