Vibrio renipiscarius strain DCR 1-4-2

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Vibrio

Description

Vibrio renipiscarius strain DCR 1-4-2 is characterized by having a single replicon, which is indicative of its genomic structure. The strain is cataloged under the accession number JTKH00000000.1, allowing for its identification and reference in genomic databases. As a member of the Vibrio genus, V. renipiscarius is likely adapted to aquatic environments, which is a common ecological niche for many Vibrio species. The presence of only one replicon suggests a streamlined genome, potentially reflecting an adaptation to its specific habitat or ecological role. This genomic characteristic may also influence its metabolic capabilities and interactions with other microorganisms within its ecosystem. Understanding the genomic traits of Vibrio renipiscarius strain DCR 1-4-2 can provide insights into its ecological interactions, such as its role in nutrient cycling or its relationships with host organisms in aquatic environments. Further research on this strain could illuminate its potential applications in biotechnology or environmental microbiology, particularly in understanding microbial dynamics in freshwater or marine systems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusVibrio
SpeciesVibrio renipiscarius
Strainstrain DCR 1-4-2

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Vibrio renipiscarius strain DCR 1-4-2
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Vibrio renipiscarius strain DCR 1-4-2 Contig30, whole genome

Gene Summary

Adenine Count

1190862 bp

Thymine Count

1186778 bp

Guanine Count

970154 bp

Cytosine Count

991893 bp

Genome Length

4339718 bp

Protein-coding Genes

3684 genes

Non-Coding Genes

116 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
preprotein translocase subunit yajcOJ16_07540Not AvailableNegative1657713 - 165803911798.6
queuine trna-ribosyltransferaseOJ16_07545Not AvailableNegative1658243 - 165937642975.5
s-adenosylmethionine trna ribosyltransferaseOJ16_07550Not AvailableNegative1659615 - 166067038994.3
acetoin utilization protein acubOJ16_07555Not AvailablePositive1660994 - 166143716459.1
isocitrate lyaseOJ16_07560Not AvailableNegative1661761 - 166307148011.2
malate synthaseOJ16_07565Not AvailableNegative1663202 - 166483961588.2
lysr family transcriptional regulatorOJ16_07570Not AvailableNegative1665438 - 166634333553.8
peroxidaseOJ16_07575Not AvailablePositive1666543 - 166715122068.2
nitrogen fixation protein nifuOJ16_07580Not AvailablePositive1667715 - 166840724450.3
gggtgrt proteinOJ16_07585Not AvailablePositive1668446 - 166943835192.8

Displaying genes 1471 – 1480 of 3800 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.