Pseudomonas putida strain CBB5

Gram-negativeRodMotileFacultative

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas putida strain CBB5 is a gram-negative, rod-shaped bacterium that thrives in soil and wastewater environments. It is classified as a heterotroph, utilizing organic compounds for energy, and exhibits a facultative oxygen requirement, allowing it to survive in both aerobic and anaerobic conditions. This strain is motile and possesses flagella, enabling it to navigate its habitat effectively. CBB5 demonstrates a mesophilic temperature range, indicating its optimal growth at moderate temperatures. It has a single replicon and is characterized by a double membrane structure. As a free-living organism, Pseudomonas putida strain CBB5 engages in various biotic relationships, interacting with a diverse array of hosts, including plants such as Triticum aestivum (wheat), Solanum lycopersicum (tomato), and Oryza sativa (rice), as well as various algae and even animals like Struthio camelus (ostrich). Despite its ecological versatility and potential benefits in soil health and plant growth, it is associated with nosocomial infections in animals, highlighting its pathogenicity. The presence of this bacterium in clinical settings emphasizes the need for further understanding of its interactions within different habitats, as it can have both beneficial and detrimental effects. Overall, Pseudomonas putida strain CBB5 exemplifies the complex roles microorganisms play in ecosystems, contributing to nutrient cycling while also posing risks to health in certain contexts. Its adaptability and diverse associations underscore its significance in both environmental and clinical microbiology.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas putida
Strainstrain CBB5

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Pseudomonas putida strain CBB5
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatSoil - Wastewater
Biotic relationshipFree living
Host(s)Homo sapiens, Viridiplantae, Triticum aestivum
Cell arrangementSingles
SporulationNonsporulating
Energy sourceHeterotroph
PathogenicityAnimal

Genome Summary

Pseudomonas putida strain CBB5 contig_147_2, whole genome shotgun

Gene Summary

Adenine Count

1365706 bp

Thymine Count

1359317 bp

Guanine Count

2045698 bp

Cytosine Count

2045704 bp

Genome Length

6817062 bp

Protein-coding Genes

5942 genes

Non-Coding Genes

75 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
membrane proteinPU99_00295Not AvailablePositive73688 - 7455132136.8
hypothetical proteinPU99_00300Not AvailableNegative74695 - 7532723298.7
rna polymerase subunit sigma-70PU99_00305Not AvailableNegative75825 - 7655626431.9
rna polymerase sigma factorPU99_00310Not AvailableNegative76553 - 7704718694.3
hypothetical proteinPU99_00315Not AvailableNegative77226 - 7776819113.8
arsr family transcriptional regulatorPU99_00325Not AvailablePositive79717 - 8006712698.6
monooxygenasePU99_00330Not AvailablePositive80106 - 8117639555.2
marr family transcriptional regulatorPU99_00335Not AvailablePositive81394 - 8189118887.6
gcn5 family acetyltransferasePU99_00340Not AvailablePositive81955 - 8245818970.8
protein tyrosine phosphatasePU99_00350Not AvailablePositive84150 - 8456315135.9

Displaying genes 61 – 70 of 6017 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Nosocomial infectionsCausesPMC11585281
Nosocomial infectionsCausesPMC13243026

Displaying health effects 1 – 2 of 2 in total