Neotamlana sedimentorum strain JCM 19808

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Flavobacteriia

Order

Flavobacteriales

Family

Flavobacteriaceae

Genus

Neotamlana

Description

Neotamlana sedimentorum strain JCM 19808 is characterized by having a single replicon, indicating a streamlined genomic structure conducive to its ecological niche. The strain is documented under the accession number JTDW00000000.1, which is essential for referencing its genetic and taxonomic information in microbial databases. As a member of the genus Neotamlana, this strain is likely adapted to its specific environment, which is typically associated with sedimentary habitats. The ecological role of such microorganisms often involves nutrient cycling and the degradation of organic materials, contributing to the overall health and functioning of their ecosystems. The presence of a single replicon may also suggest a certain degree of evolutionary specialization, potentially allowing for efficient replication and resource utilization in its native habitat. This adaptation could be significant for survival in competitive environments, where resources may be limited or fluctuating. Understanding the specific traits of Neotamlana sedimentorum strain JCM 19808 provides insights into its ecological role and evolutionary strategies. The strain's genomic simplicity, as indicated by the single replicon, may enhance its adaptability and efficiency in sediment environments, highlighting its importance in microbial ecology and potential applications in bioremediation or environmental monitoring.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyFlavobacteriaceae
GenusNeotamlana
SpeciesNeotamlana sedimentorum
Strainstrain JCM 19808

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Neotamlana sedimentorum strain JCM 19808 contig54, whole genome

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

Not Available

Non-Coding Genes

Not Available

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinPW52_00135Not AvailablePositive36463 - 3761444441.7
hypothetical proteinPW52_00140Not AvailableNegative37728 - 3879840411.3
d-mannonate oxidoreductasePW52_00145Not AvailablePositive38922 - 3974929090.8
mannonate dehydratasePW52_00150Not AvailablePositive39771 - 4094344238.6
glucuronate isomerasePW52_00155Not AvailablePositive41275 - 4267854461.8
2-dehydro-3-deoxygluconokinasePW52_00160Not AvailablePositive42723 - 4376938169.6
keto-deoxy-phosphogluconate aldolasePW52_00165Not AvailablePositive43861 - 4452923737.0
c4-dicarboxylate abc transporter substrate-binding proteinPW52_00170Not AvailablePositive44554 - 4552536740.1
c4-dicarboxylate abc transporter permeasePW52_00175Not AvailablePositive45527 - 4598817108.0
membrane proteinPW52_00180Not AvailablePositive45991 - 4728645628.4

Displaying genes 31 – 40 of 3186 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.