Roseivirga seohaensis subsp. aquiponti strain D-25

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Cytophagia

Order

Cytophagales

Family

Roseivirgaceae

Genus

Roseivirga

Description

Roseivirga seohaensis subsp. aquiponti strain D-25 is a Gram-negative bacterium characterized by its rod-shaped morphology. This strain is notable for possessing a single replicon, which is a distinct feature in its genomic structure. The strain is cataloged under the accession number JSVA00000000.1, providing a reference point for genetic and taxonomic studies. The classification of R. seohaensis subsp. aquiponti indicates its adaptation to aquatic environments, as suggested by its subspecies designation. While specific ecological roles and interactions are not detailed in the provided data, the presence of such bacteria in aquatic habitats often contributes to nutrient cycling and may play a role in the degradation of organic matter. In summary, Roseivirga seohaensis subsp. aquiponti strain D-25 exhibits defining traits such as being Gram-negative, rod-shaped, and having a single replicon. Understanding these characteristics aids in recognizing its potential ecological significance in aquatic ecosystems, although further research would be necessary to elucidate its specific functions within these environments.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassCytophagia
OrderCytophagales
FamilyRoseivirgaceae
GenusRoseivirga
SpeciesRoseivirga seohaensis
Strainsubsp. aquiponti strain D-25

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Roseivirga seohaensis subsp. aquiponti strain D-25

Gene Summary

Adenine Count

1241683 bp

Thymine Count

1242051 bp

Guanine Count

798981 bp

Cytosine Count

800699 bp

Genome Length

4083414 bp

Protein-coding Genes

3333 genes

Non-Coding Genes

45 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinOB69_00375Not AvailableNegative98214 - 9944946763.9
hypothetical proteinOB69_00380Q8D4U6Negative99673 - 10043429630.7
hypothetical proteinOB69_00385P0AA94Negative100452 - 10136634749.8
hypothetical proteinOB69_00390Not AvailableNegative101482 - 10278648876.7
amidohydrolaseOB69_00395Not AvailableNegative102886 - 10397141008.0
3-oxoacyl-acp reductaseOB69_00400O67610Positive104153 - 10491127097.2
hypothetical proteinOB69_00405Q49XM6Negative104908 - 10623950229.8
transcriptional regulatorOB69_00410Q47456Negative106242 - 10692526036.6
Ncrna_class:rnase_p_rnaNot AvailableNot AvailablePositive107811 - 108145Not Available
hypothetical proteinOB69_00415Not AvailableNegative106922 - 10829851900.5

Displaying genes 71 – 80 of 3378 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

156 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000122echinenoneC40H54OChemical structure of echinenoneNot available
Average550.871Da
Monoisotopic550.417466359Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000305tetrathionateO6S4Chemical structure of tetrathionateNot available
Average224.24Da
Monoisotopic223.8588696Da
BASm0000315acetylpyruvateC5H6O4Chemical structure of acetylpyruvateNot available
Average130.099Da
Monoisotopic130.0266087Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm0000430hercynineC9H15N3O2Chemical structure of hercynineNot available
Average197.238Da
Monoisotopic197.1164267Da
BASm0000642S-adenosyl-4-methylsulfanyl-2-oxobutanoateC15H19N5O6SChemical structure of S-adenosyl-4-methylsulfanyl-2-oxobutanoateNot available
Average397.406Da
Monoisotopic397.105604055Da

Displaying 1–10 of 156 metabolites

Health Effects

No health effects information available for this bacterium.