Bifidobacterium bifidum strain LMG 11583

Gram-positiveRodNon-motileAnaerobe

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Bifidobacteriales

Family

Bifidobacteriaceae

Genus

Bifidobacterium

Description

Bifidobacterium bifidum strain LMG 11583 is a Gram-positive, non-motile rod-shaped bacterium classified as an anaerobe. It is associated with host environments, specifically found in Homo sapiens and Rodentia. This strain exhibits a mesophilic temperature range, indicating its optimal growth occurs at moderate temperatures. Bifidobacterium bifidum is characterized by having a single replicon and a single membrane, which reflects its simple cellular structure. It is nonsporulating, meaning it does not form spores as a means of survival under adverse conditions. This trait is typical of many members of the Bifidobacterium genus, which thrive in the gastrointestinal tracts of their hosts. In terms of its biotic relationships, B. bifidum LMG 11583 is free-living, suggesting it plays a role in the gut microbiome without relying on a specific host for survival. Its presence in the gut is associated with beneficial health effects, particularly in the context of gut health (GH). The strain is known to contribute to the maintenance of a balanced gut microbiota, which can have implications for overall health and disease prevention. This bacterium's role in the gut ecosystem highlights the importance of microbial diversity in host health. By residing in the intestines of both humans and rodents, Bifidobacterium bifidum strain LMG 11583 may play a crucial role in digestion and the modulation of immune responses, reflecting the intricate relationships between host organisms and their microbiota.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderBifidobacteriales
FamilyBifidobacteriaceae
GenusBifidobacterium
SpeciesBifidobacterium bifidum
Strainstrain LMG 11583

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes1
Image of Bifidobacterium bifidum strain LMG 11583
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens, Rodentia
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Bifidobacterium bifidum strain LMG 11583 Contig17, whole genome

Gene Summary

Adenine Count

412050 bp

Thymine Count

419487 bp

Guanine Count

704561 bp

Cytosine Count

702435 bp

Genome Length

2238534 bp

Protein-coding Genes

1756 genes

Non-Coding Genes

80 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
rna binding proteinLMG11583_0889Q6AE99Negative1042735 - 10429688638.48
30s ribosomal protein s16LMG11583_0890A0ZZV7Negative1042971 - 104342016010.8
multiple substrate aminotransferaseLMG11583_0891Q796Q6Negative1043997 - 104552655602.2
lysine exporter proteinLMG11583_0892Not AvailablePositive1045729 - 104642123849.0
endonuclease/exonuclease/phosphataseLMG11583_0893Not AvailableNegative1046691 - 104786342424.8
signal recognition particle proteinLMG11583_0894P66845Negative1048039 - 104968558233.0
membrane spanning proteinLMG11583_0895Not AvailablePositive1050046 - 105095433627.3
cysteinyl-trna synthetase cyssLMG11583_0896Q8G7G5Negative1051184 - 105280658526.3
amidotransferaseLMG11583_0897Q97VZ9Positive1052953 - 105367826398.1
abc transporter atp-binding proteinLMG11583_0898O06476Positive1053786 - 105590677348.2

Displaying genes 861 – 870 of 1836 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

109 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000400(R)-10-hydroxyoctadecanoateC18H35O3Chemical structure of (R)-10-hydroxyoctadecanoateNot available
Average299.476Da
Monoisotopic299.2591686Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm0000848hexanoateC6H11O2Chemical structure of hexanoateNot available
Average115.1503Da
Monoisotopic115.075904596Da
BASm0000950L-xyluloseC5H10O5Chemical structure of L-xylulose527-50-4
Average150.1299Da
Monoisotopic150.05282343Da
BASm0001142butanoateC4H7O2Chemical structure of butanoateNot available
Average87.099Da
Monoisotopic87.045153045Da
BASm0001225dodecanoateC12H23O2Chemical structure of dodecanoateNot available
Average199.3098Da
Monoisotopic199.169805Da
BASm0001279(6S)-5-methyl-5,6,7,8-tetrahydrofolateC20H23N7O6Chemical structure of (6S)-5-methyl-5,6,7,8-tetrahydrofolateNot available
Average457.4399Da
Monoisotopic457.1709815Da

Displaying 1–10 of 109 metabolites

Health Effects

Health ConditionRelationReference
GhCausesPMC10522390

Displaying health effects 1 – 1 of 1 in total