Bifidobacterium bifidum strain 85B

Gram-positiveRodNon-motileAnaerobe

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Bifidobacteriales

Family

Bifidobacteriaceae

Genus

Bifidobacterium

Description

Bifidobacterium bifidum strain 85B is a Gram-positive, anaerobic, rod-shaped bacterium that is free-living and primarily associated with hosts such as Homo sapiens and Rodentia. This strain does not possess mobility, as it lacks flagella. It has a mesophilic temperature range, indicating that it thrives at moderate temperatures typically found in the intestines of its hosts. With only one replicon and a single membrane, B. bifidum 85B exhibits a relatively simple genomic structure, which is characteristic of many bacteria in the Bifidobacterium genus. This simplicity may contribute to its ability to adapt and maintain a stable presence in the intestinal microbiota of its hosts. The health effects attributed to this strain are categorized as "GH," which suggests beneficial roles in gut health. B. bifidum strains are known to play a role in maintaining the gut microbiome balance, potentially enhancing digestive health and immune function in their hosts. In summary, Bifidobacterium bifidum strain 85B exemplifies the adaptations of gut-associated bacteria to a mesophilic and anaerobic environment. Its free-living nature and ability to coexist in the digestive systems of both humans and rodents highlight its ecological significance in promoting gut health and maintaining microbiome diversity.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderBifidobacteriales
FamilyBifidobacteriaceae
GenusBifidobacterium
SpeciesBifidobacterium bifidum
Strainstrain 85B

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes1
Image of Bifidobacterium bifidum strain 85B
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens, Rodentia
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Bifidobacterium bifidum strain 85B Contig09, whole genome shotgun

Gene Summary

Adenine Count

435710 bp

Thymine Count

438631 bp

Guanine Count

744208 bp

Cytosine Count

742413 bp

Genome Length

2360966 bp

Protein-coding Genes

1842 genes

Non-Coding Genes

73 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
phosphoglycerate mutaseB0085_0927Not AvailablePositive1077649 - 107830824683.4
abc transporter substrate-binding proteinB0085_0930Q9K9G6Negative1079751 - 108053627990.8
abc transporter substrate-binding proteinB0085_0931Not AvailableNegative1080799 - 108186637766.0
haloacid dehalogenaseB0085_0932Q94529Positive1082297 - 108295623237.5
glutamyl-trna synthetaseB0085_0934B3DU87Positive1084412 - 108594156984.8
Trna-gluNot AvailableNot AvailablePositive1087498 - 1087573Not Available
Trna-glnNot AvailableNot AvailablePositive1087614 - 1087688Not Available
phosphoesteraseB0085_0937Q9FMK9Positive1087968 - 108925746492.1
hth-type transcriptional regulatorB0085_0938Not AvailableNegative1089400 - 109025430227.1
isopropylmalate isomerase large subunitB0085_0939B7GNM7Positive1090528 - 109193150151.0

Displaying genes 871 – 880 of 1915 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

110 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000400(R)-10-hydroxyoctadecanoateC18H35O3Chemical structure of (R)-10-hydroxyoctadecanoateNot available
Average299.476Da
Monoisotopic299.2591686Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm0000848hexanoateC6H11O2Chemical structure of hexanoateNot available
Average115.1503Da
Monoisotopic115.075904596Da
BASm0001086scyllo-inososeC6H10O6Chemical structure of scyllo-inososeNot available
Average178.14Da
Monoisotopic178.0477381Da
BASm0001142butanoateC4H7O2Chemical structure of butanoateNot available
Average87.099Da
Monoisotopic87.045153045Da
BASm0001225dodecanoateC12H23O2Chemical structure of dodecanoateNot available
Average199.3098Da
Monoisotopic199.169805Da
BASm0001279(6S)-5-methyl-5,6,7,8-tetrahydrofolateC20H23N7O6Chemical structure of (6S)-5-methyl-5,6,7,8-tetrahydrofolateNot available
Average457.4399Da
Monoisotopic457.1709815Da

Displaying 1–10 of 110 metabolites

Health Effects

Health ConditionRelationReference
GhCausesPMC10522390

Displaying health effects 1 – 1 of 1 in total