Bifidobacterium bifidum strain 85B

Gram-positiveRodNon-motileAnaerobe

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Bifidobacteriales

Family

Bifidobacteriaceae

Genus

Bifidobacterium

Description

Bifidobacterium bifidum strain 85B is a Gram-positive, anaerobic, rod-shaped bacterium that is free-living and primarily associated with hosts such as Homo sapiens and Rodentia. This strain does not possess mobility, as it lacks flagella. It has a mesophilic temperature range, indicating that it thrives at moderate temperatures typically found in the intestines of its hosts. With only one replicon and a single membrane, B. bifidum 85B exhibits a relatively simple genomic structure, which is characteristic of many bacteria in the Bifidobacterium genus. This simplicity may contribute to its ability to adapt and maintain a stable presence in the intestinal microbiota of its hosts. The health effects attributed to this strain are categorized as "GH," which suggests beneficial roles in gut health. B. bifidum strains are known to play a role in maintaining the gut microbiome balance, potentially enhancing digestive health and immune function in their hosts. In summary, Bifidobacterium bifidum strain 85B exemplifies the adaptations of gut-associated bacteria to a mesophilic and anaerobic environment. Its free-living nature and ability to coexist in the digestive systems of both humans and rodents highlight its ecological significance in promoting gut health and maintaining microbiome diversity.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderBifidobacteriales
FamilyBifidobacteriaceae
GenusBifidobacterium
SpeciesBifidobacterium bifidum
Strainstrain 85B

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes1
Image of Bifidobacterium bifidum strain 85B
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens, Rodentia
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Bifidobacterium bifidum strain 85B Contig09, whole genome shotgun

Gene Summary

Adenine Count

435710 bp

Thymine Count

438631 bp

Guanine Count

744208 bp

Cytosine Count

742413 bp

Genome Length

2360966 bp

Protein-coding Genes

1842 genes

Non-Coding Genes

73 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
peptide abc transporter atpaseB0085_0267Q74AT2Positive325453 - 32608822961.7
branched-chain amino acid permeaseB0085_0268O07923Positive326376 - 3266249074.58
nad-dependent oxidoreductaseB0085_0269Q642M9Negative326694 - 32774937280.4
protein tyrosine phosphatase ptpaB0085_0270P65717Negative327977 - 32849519597.3
dihydrofolate reductaseB0085_0271Q9CBW1Negative328565 - 32922424574.7
thymidylate synthaseB0085_0272Q8G3T9Negative329272 - 33014433322.6
hypothetical proteinB0085_0273P9WL18Positive330598 - 33101115117.8
universal stress proteinB0085_0274A0QZA1Negative331155 - 33219536541.2
cell wall-associated proteinB0085_0275P13692Negative332475 - 33328128308.2
n-acetylmuramoyl-l-alanine amidaseB0085_0276Q2G278Negative333432 - 33445435807.5

Displaying genes 271 – 280 of 1915 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

110 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000400(R)-10-hydroxyoctadecanoateC18H35O3Chemical structure of (R)-10-hydroxyoctadecanoateNot available
Average299.476Da
Monoisotopic299.2591686Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm0000848hexanoateC6H11O2Chemical structure of hexanoateNot available
Average115.1503Da
Monoisotopic115.075904596Da
BASm0001086scyllo-inososeC6H10O6Chemical structure of scyllo-inososeNot available
Average178.14Da
Monoisotopic178.0477381Da
BASm0001142butanoateC4H7O2Chemical structure of butanoateNot available
Average87.099Da
Monoisotopic87.045153045Da
BASm0001225dodecanoateC12H23O2Chemical structure of dodecanoateNot available
Average199.3098Da
Monoisotopic199.169805Da
BASm0001279(6S)-5-methyl-5,6,7,8-tetrahydrofolateC20H23N7O6Chemical structure of (6S)-5-methyl-5,6,7,8-tetrahydrofolateNot available
Average457.4399Da
Monoisotopic457.1709815Da

Displaying 1–10 of 110 metabolites

Health Effects

Health ConditionRelationReference
GhCausesPMC10522390

Displaying health effects 1 – 1 of 1 in total