Candidatus Protochlamydia amoebophila strain EI2 DB44_HJ

Gram-negative

Kingdom

Pseudomonadati

Phylum

Chlamydiota

Class

Chlamydiia

Order

Parachlamydiales

Family

Parachlamydiaceae

Genus

Candidatus Protochlamydia

Description

Candidatus Protochlamydia amoebophila strain EI2 DB44_HJ is a Gram-negative bacterium characterized by its mesophilic temperature range, indicating optimal growth at moderate temperatures typically found in natural environments. This strain is notable for having a single replicon, which is indicative of its streamlined genomic organization. The biotic relationship of Candidatus Protochlamydia amoebophila is symbiotic, specifically with amoebae, particularly Acanthamoeba sp. This interaction suggests that the bacterium may play a role in the ecological dynamics of its host environment, potentially influencing the behaviors and health of the amoebae. The specific accession number for this strain is JSAN00000000.1, which provides a reference for genomic studies and further characterization. The symbiotic nature of Candidatus Protochlamydia amoebophila highlights its potential importance in microbial ecology, particularly in understanding host-microbe interactions. This relationship may contribute to nutrient cycling within the ecosystem, as well as impact the survival and proliferation of both the bacterium and its amoebic hosts. Understanding such interactions can offer insights into the broader implications of symbiotic relationships in microbial communities and their roles in various environmental contexts.

Taxonomy

KingdomPseudomonadati
PhylumChlamydiota
ClassChlamydiia
OrderParachlamydiales
FamilyParachlamydiaceae
GenusCandidatus Protochlamydia
SpeciesCandidatus Protochlamydia amoebophila
Strainstrain EI2 DB44_HJ

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatNot Available
Biotic relationshipSymbiotic
Host(s)Amoeba, Acanthamoeba sp.
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Candidatus Protochlamydia amoebophila strain EI2 DB44_HJ, whole

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

1940 genes

Non-Coding Genes

265 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
putative rna pseudouridine synthase ylybDB44_BE00140Not AvailablePositive486548 - 48751936539.8
d-tyrosyl-trna(tyr) deacylaseDB44_BE00150Not AvailablePositive487491 - 48798218717.8
upf0109 proteinDB44_BE00160Not AvailablePositive488113 - 48845413048.2
hypothetical proteinDB44_BE00170Not AvailableNegative488747 - 49057670199.8
hypothetical proteinDB44_BF00010Not AvailableNegative490677 - 49137826472.5
Trna-argNot AvailableNot AvailablePositive491402 - 491474Not Available
hypothetical proteinDB44_BF00020Not AvailableNegative491609 - 49201315363.2
2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinaseDB44_BF00030Not AvailablePositive492461 - 49297619685.8
2-dehydro-3-deoxyphosphooctonate aldolaseDB44_BF00040Not AvailablePositive493000 - 49383330361.7
hypothetical proteinDB44_BF00050Not AvailablePositive494421 - 49599560215.3

Displaying genes 411 – 420 of 2205 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.