Candidatus Protochlamydia amoebophila strain EI2 DB44_HJ

Gram-negative

Kingdom

Pseudomonadati

Phylum

Chlamydiota

Class

Chlamydiia

Order

Parachlamydiales

Family

Parachlamydiaceae

Genus

Candidatus Protochlamydia

Description

Candidatus Protochlamydia amoebophila strain EI2 DB44_HJ is a Gram-negative bacterium characterized by its mesophilic temperature range, indicating optimal growth at moderate temperatures typically found in natural environments. This strain is notable for having a single replicon, which is indicative of its streamlined genomic organization. The biotic relationship of Candidatus Protochlamydia amoebophila is symbiotic, specifically with amoebae, particularly Acanthamoeba sp. This interaction suggests that the bacterium may play a role in the ecological dynamics of its host environment, potentially influencing the behaviors and health of the amoebae. The specific accession number for this strain is JSAN00000000.1, which provides a reference for genomic studies and further characterization. The symbiotic nature of Candidatus Protochlamydia amoebophila highlights its potential importance in microbial ecology, particularly in understanding host-microbe interactions. This relationship may contribute to nutrient cycling within the ecosystem, as well as impact the survival and proliferation of both the bacterium and its amoebic hosts. Understanding such interactions can offer insights into the broader implications of symbiotic relationships in microbial communities and their roles in various environmental contexts.

Taxonomy

KingdomPseudomonadati
PhylumChlamydiota
ClassChlamydiia
OrderParachlamydiales
FamilyParachlamydiaceae
GenusCandidatus Protochlamydia
SpeciesCandidatus Protochlamydia amoebophila
Strainstrain EI2 DB44_HJ

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatNot Available
Biotic relationshipSymbiotic
Host(s)Amoeba, Acanthamoeba sp.
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Candidatus Protochlamydia amoebophila strain EI2 DB44_HJ, whole

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

1940 genes

Non-Coding Genes

265 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
transcription termination factor rhoDB44_AS00050Not AvailableNegative326612 - 32802152740.9
dephospho-coa kinaseDB44_AS00060Not AvailableNegative328031 - 32865123553.6
dna polymerase iDB44_AS00070Not AvailableNegative328636 - 33069978742.5
putative signal peptide peptidase sppaDB44_AS00080Not AvailableNegative331334 - 33238038339.4
dipeptidyl peptidase family member 6DB44_AS00090Not AvailablePositive332720 - 33466973836.0
sulfite reductaseDB44_AS00100Not AvailablePositive334666 - 33583245591.4
2-c-methyl-d-erythritol 2,4-cyclodiphosphate synthaseDB44_AS00110Not AvailableNegative336311 - 33683819062.1
hypothetical proteinDB44_AS00120Not AvailablePositive336969 - 33805742609.2
udp-n-acetylglucosamine 1-carboxyvinyltransferaseDB44_AS00130Not AvailablePositive338229 - 33963250863.9
l-lysine 2,3-aminomutaseDB44_AS00140Not AvailablePositive339770 - 34083140790.7

Displaying genes 271 – 280 of 2205 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.