Vibrio sinaloensis strain T08

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Vibrio

Description

Vibrio sinaloensis strain T08 is characterized by having a single replicon, which is noteworthy for its genetic stability. This strain has been identified as associated with the marine shrimp species Penaeus vannamei, indicating its potential relevance in aquaculture settings. The association with this specific host suggests that V. sinaloensis strain T08 may play a role in the health and microbiome dynamics of Penaeus vannamei, which is a commercially important shrimp species. The genomic data for Vibrio sinaloensis strain T08 can be accessed through the accession number JRWP00000000.1, which provides insights into its genetic makeup and potential functionalities. This genetic information could be crucial for understanding the interactions between the bacterium and its host, as well as its ecological role in marine environments, particularly in relation to shrimp farming. Ecologically, the presence of Vibrio sinaloensis strain T08 within the microbiome of Penaeus vannamei may influence disease dynamics, nutrient cycling, or host health. The single replicon suggests a streamlined genomic organization that could facilitate adaptation to the marine environment where the shrimp thrive. Overall, the study of Vibrio sinaloensis strain T08 not only contributes to our understanding of shrimp-associated microbiota but also emphasizes the importance of microbial interactions in aquaculture ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusVibrio
SpeciesVibrio sinaloensis
Strainstrain T08

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Vibrio sinaloensis strain T08
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Penaeus vannamei
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Vibrio sinaloensis strain T08 Contig100, whole genome shotgun

Gene Summary

Adenine Count

1230515 bp

Thymine Count

1225096 bp

Guanine Count

1046622 bp

Cytosine Count

1062857 bp

Genome Length

4565090 bp

Protein-coding Genes

4001 genes

Non-Coding Genes

76 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
cell division protein ftsnNM06_00055Not AvailablePositive13367 - 1391220628.0
atp-dependent protease subunit hslvNM06_00060Not AvailablePositive14041 - 1458619522.4
atp-dependent protease atp-binding subunit hsluNM06_00065Not AvailablePositive14624 - 1595850044.1
hypothetical proteinNM06_00070Not AvailablePositive16186 - 1758952568.6
hypothetical proteinNM06_00075Not AvailableNegative17704 - 1870836283.5
fumarate reductaseNM06_00080Not AvailableNegative18938 - 1931513652.1
fumarate reductaseNM06_00085Not AvailableNegative19328 - 1971114547.5
fumarate reductaseNM06_00090Not AvailableNegative19713 - 2047728208.7
fumarate reductaseNM06_00095Not AvailableNegative20477 - 2229466713.2
poxb regulator poxaNM06_00100Not AvailablePositive22722 - 2369336634.8

Displaying genes 11 – 20 of 4077 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.