Pseudomonas sp. H2

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas sp. H2 is characterized by having a single replicon, which is a notable trait that defines its genomic structure. This organism is cataloged under the accession number JRPO00000000.1, indicating its specific genetic sequence has been documented in a public database, facilitating further study and comparison with other Pseudomonas species. The genomic simplicity, with only one replicon, may suggest a streamlined genetic organization that could be advantageous in certain environments. Pseudomonas species are generally known for their metabolic versatility, which allows them to thrive in diverse ecological niches. This adaptability is often attributed to their ability to utilize various carbon sources and exhibit resistance to different environmental stresses. From an ecological perspective, Pseudomonas sp. H2 may play a role in biogeochemical cycles or in the degradation of pollutants, as many members of the Pseudomonas genus are known for their capacity to metabolize complex organic compounds. Understanding the specific traits of Pseudomonas sp. H2, particularly its single replicon, could provide insights into its ecological functions and potential applications in bioremediation or biotechnology. Overall, the genetic characteristics of Pseudomonas sp. H2 highlight its potential significance within microbial communities and its adaptability to various environmental conditions.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas sp. H2
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas sp. H2
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas sp. H2 contig00132, whole genome shotgun sequence.

Gene Summary

Adenine Count

1077343 bp

Thymine Count

1087280 bp

Guanine Count

1823488 bp

Cytosine Count

1802295 bp

Genome Length

5790406 bp

Protein-coding Genes

4985 genes

Non-Coding Genes

67 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
lysr family transcriptional regulatorMD26_00090Not AvailableNegative18804 - 1971534170.9
tartrate dehydrogenaseMD26_00095Not AvailablePositive19814 - 2090540189.8
dioxygenaseMD26_00105Not AvailablePositive22825 - 2394642315.6
dioxygenaseMD26_00110Not AvailablePositive24023 - 2499434661.2
sensor box proteinMD26_00115Not AvailablePositive25101 - 2618041757.5
luxr family transcriptional regulatorMD26_00120Not AvailableNegative26286 - 2711930723.5
hypothetical proteinMD26_00125Not AvailableNegative27173 - 2858552037.5
spermidine/putrescine abc transporter substrate-binding proteinMD26_00130Not AvailableNegative28620 - 2972340429.5
5s ribosomal rnaNot AvailableNot AvailablePositive29841 - 29956Not Available
nad(p)h dehydrogenaseMD26_00135Not AvailableNegative29956 - 3065726083.4

Displaying genes 21 – 30 of 5052 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.