Bradyrhizobium japonicum strain Is-34

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Nitrobacteraceae

Genus

Bradyrhizobium

Description

Bradyrhizobium japonicum strain Is-34 is a Gram-negative, rod-shaped bacterium primarily found in soybean fields. This strain possesses true flagella, which facilitates its motility in the soil environment. It has a single replicon, indicating a streamlined genetic organization that is often associated with efficiency in environmental adaptation and host interaction. Notably, B. japonicum strain Is-34 has a diverse range of hosts, including various species of algae such as Chlamydomonas reinhardtii, Chlorella vulgaris, and Scenedesmus sp., as well as the green microalgae Botryococcus braunii and other members of the Chlorophyta. It also interacts with several plant species, including Glycine max (soybean), Aeschynomene, Neptunia, and Sesbania. This wide host range highlights the strain's ecological versatility, particularly its ability to establish symbiotic relationships with leguminous plants, which is crucial for nitrogen fixation. The presence of B. japonicum in soybean fields underscores its significance in agriculture, as it contributes to soil fertility through nitrogen fixation, enhancing crop yields. This symbiotic relationship not only benefits the plants but also influences the microbial community dynamics in agricultural ecosystems. Understanding the traits of B. japonicum strain Is-34 can inform sustainable agricultural practices and improve crop management strategies.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyNitrobacteraceae
GenusBradyrhizobium
SpeciesBradyrhizobium japonicum
Strainstrain Is-34

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Bradyrhizobium japonicum strain Is-34
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatsoybean fields
Biotic relationshipNot Available
Host(s)Homo sapiens, Chlamydomonas reinhardtii, Chlorella vulgaris
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Bradyrhizobium japonicum strain Is-34 contig_248, whole genome

Gene Summary

Adenine Count

1908601 bp

Thymine Count

1907031 bp

Guanine Count

3259496 bp

Cytosine Count

3250853 bp

Genome Length

10326597 bp

Protein-coding Genes

9123 genes

Non-Coding Genes

101 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
methionine abc transporter substrate-binding proteinMA20_00165Not AvailablePositive26070 - 2686428601.4
luciferaseMA20_00170Not AvailablePositive26988 - 2802237100.4
avi_7170 family cmd domain-containing proteinMA20_00175Not AvailablePositive28060 - 2868321467.8
alkylhydroperoxidaseMA20_00180Not AvailablePositive28696 - 2928021503.3
abc transporter substrate-binding proteinMA20_00185Not AvailablePositive29340 - 3049741800.6
abc transporter permeaseMA20_00190Not AvailablePositive30554 - 3237763809.7
branched-chain amino acid abc transporter atp-binding proteinMA20_00195Not AvailablePositive32377 - 3322530477.4
abc transporter atp-binding proteinMA20_00200Not AvailablePositive33222 - 3396226502.5
nickel transporterMA20_00205Not AvailablePositive34216 - 3528937655.7
tonb-dependent receptorMA20_00210Not AvailablePositive35270 - 3758583192.2

Displaying genes 61 – 70 of 9224 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

88 records
Metabolite IDMetabolite nameStructureCAS number
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm00055001-octadecanoyl-sn-glycero-3-phosphateC21H41O7PChemical structure of 1-octadecanoyl-sn-glycero-3-phosphateNot available
Average436.5198Da
Monoisotopic436.2589902Da
BASm0012554N-acetyl-beta-D-glucosaminyl-(1->4)-1,6-anhydro-N-acetyl-beta-D-muramoyl-L-alanyl-gamma-D-glutamyl-meso-diaminoheptanedioate-D-alanineC37H57N7O20Not availableNot available
Average919.893Da
Monoisotopic919.366934423Da
BASm0014032Acetic acidC2H4O2Chemical structure of Acetic acid64-19-7
Average60.052Da
Monoisotopic60.021129372Da
BASm0014033AmmoniaH3NChemical structure of Ammonia7664-41-7
Average17.0305Da
Monoisotopic17.026549101Da
BASm0014041Oleic acidC18H34O2Chemical structure of Oleic acid112-80-1
Average282.4614Da
Monoisotopic282.255880332Da
BASm0014058Myristic acidC14H28O2Chemical structure of Myristic acid544-63-8
Average228.3709Da
Monoisotopic228.20893014Da
BASm0014182Vaccenic acidC18H34O2Chemical structure of Vaccenic acidNULL
Average282.468Da
Monoisotopic282.255880335Da
BASm0014219Palmitoleic acidC16H30O2Chemical structure of Palmitoleic acidNULL
Average254.4082Da
Monoisotopic254.224580204Da
BASm0014222DiethanolamineC4H11NO2Chemical structure of DiethanolamineNULL
Average105.1356Da
Monoisotopic105.078978601Da

Displaying 1–10 of 88 metabolites

Health Effects

No health effects information available for this bacterium.