Solemya velum gill symbiont strain WH

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Family

Genus

Description

Solemya velum gill symbiont strain WH is characterized by having a single replicon. This trait is significant in understanding its genomic structure and potential evolutionary adaptations. The strain is cataloged under the accession number JRAA00000000.1, which provides a reference for researchers looking to study its genetic makeup and symbiotic functions. The gill symbionts of Solemya velum are important in the context of their ecological niche, particularly in marine environments where they inhabit deep-sea ecosystems. These symbionts play a crucial role in nutrient cycling and energy acquisition for their host, utilizing chemosynthesis to convert inorganic compounds into organic matter. This is particularly vital in environments lacking sunlight, where traditional photosynthesis cannot occur. The reliance of Solemya velum on its gill symbionts highlights the intricate relationships within marine ecosystems, demonstrating how species adapt to their environments through symbiotic partnerships. Understanding the genomic characteristics, such as the single replicon structure of strain WH, can provide insights into the metabolic capabilities and ecological roles of these symbionts. Overall, Solemya velum and its gill symbionts exemplify the complexity of life in extreme habitats, emphasizing the importance of microbial symbiosis in sustaining marine biodiversity and ecosystem function.

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Solemya velum gill symbiont strain WH SV_sym_Scaffold_10, whole

Gene Summary

Adenine Count

664253 bp

Thymine Count

659743 bp

Guanine Count

686615 bp

Cytosine Count

691739 bp

Genome Length

2702377 bp

Protein-coding Genes

2716 genes

Non-Coding Genes

42 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
fe2+/zn2+ uptake regulation proteinJV46_05780Not AvailableNegative1827015 - 182746716744.1
abc-type mn2 /zn2 transporter znubca, subunit bJV46_05790Not AvailableNegative1827464 - 182829429396.5
abc-type mn2 /zn2 transporter znubca, subunit cJV46_05800Not AvailableNegative1828316 - 182903826204.9
abc-type mn2 /zn2 transporter znubca, subunit aJV46_05810Not AvailableNegative1829035 - 182997034205.2
hypothetical proteinJV46_10070Not AvailablePositive1830015 - 183056320759.5
metal-dependent hydrolaseJV46_05820Not AvailableNegative1830602 - 183140229705.4
dsba-like thioredoxin domain-containing proteinJV46_05830Not AvailableNegative1831411 - 183203123587.7
d-tyrosyl-trna(tyr) deacylaseJV46_05840Not AvailableNegative1832119 - 183255915851.9
dna-(apurinic or apyrimidinic site) lyaseJV46_10080Not AvailablePositive1832891 - 183352323611.8
ferrochelataseJV46_10090Not AvailablePositive1833626 - 183463938280.0

Displaying genes 1871 – 1880 of 2758 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.