Devosia riboflavina strain IFO13584

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Devosiaceae

Genus

Devosia

Description

Devosia riboflavina strain IFO13584 is a Gram-negative bacterium characterized by its rod-shaped morphology. This strain has been cataloged with a single replicon, which indicates a streamlined genomic organization. The genomic information for this strain is stored under the accession number JQGC00000000.1. Devosia species are known to inhabit various environments, including soil and water, where they may play a role in nutrient cycling. The Gram-negative nature of Devosia riboflavina suggests that it possesses a complex outer membrane structure, which may provide advantages in specific ecological niches by facilitating interactions with other microorganisms and organic compounds in its environment. Understanding the characteristics of this strain contributes to the broader knowledge of the Devosia genus, which is relevant in studies related to microbial diversity and ecological roles in their habitats.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyDevosiaceae
GenusDevosia
SpeciesDevosia riboflavina
Strainstrain IFO13584

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatriboflavin-rich soil
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Devosia riboflavina strain IFO13584 contig113, whole genome

Gene Summary

Adenine Count

969209 bp

Thymine Count

959176 bp

Guanine Count

1546828 bp

Cytosine Count

1577021 bp

Genome Length

5052234 bp

Protein-coding Genes

4254 genes

Non-Coding Genes

76 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinJP75_17675Not AvailableNegative3477746 - 347803610045.1
homoserine dehydrogenaseJP75_17680Not AvailablePositive3478200 - 347951946159.0
hypothetical proteinJP75_17685Not AvailableNegative3479535 - 348050633584.8
fad-binding proteinJP75_17690Not AvailablePositive3480627 - 348143629291.7
ribokinaseJP75_17700Not AvailableNegative3482029 - 348291330588.7
pseudouridine-5'-phosphate glycosidaseJP75_17705Not AvailableNegative3482910 - 348385732543.2
spermidine/putrescine abc transporter substrate-binding proteinJP75_17710Not AvailablePositive3484250 - 348537440464.8
abc transporter atp-binding proteinJP75_17715Not AvailablePositive3485432 - 348658642705.3
spermidine/putrescine abc transporter permeaseJP75_17720Not AvailablePositive3486786 - 348773935026.2
spermidine/putrescine abc transporter permeaseJP75_17725Not AvailablePositive3487741 - 348855028903.2

Displaying genes 3011 – 3020 of 4330 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.