Cryobacterium roopkundense strain RuG17

rodaerobic

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Micrococcales

Family

Microbacteriaceae

Genus

Cryobacterium

Description

Cryobacterium roopkundense strain RuG17 is a Gram-positive, aerobic bacterium characterized by its rod shape. This strain exhibits psychrotolerant properties, thriving optimally at a temperature of 16°C while being capable of surviving in lower temperature environments. The organism possesses a single replicon, a feature that may influence its genetic stability and replication processes. The specific accession number for this strain is JPXF00000000.1, which provides a reference point for further genetic and genomic studies. Understanding the genetic makeup of Cryobacterium roopkundense strain RuG17 may yield insights into its adaptations to cold environments, particularly in terms of metabolic processes and survival strategies in psychrophilic conditions. The ecological significance of Cryobacterium roopkundense strain RuG17 lies in its potential role in nutrient cycling within cold habitats, such as glacial or high-altitude regions. Its ability to thrive in low temperatures suggests that it may contribute to the microbiological communities in these ecosystems, where temperature fluctuations can significantly impact microbial activity and biodiversity. This adaptability may also provide insights into microbial life in extreme environments, helping to deepen our understanding of life in cold climates.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMicrococcales
FamilyMicrobacteriaceae
GenusCryobacterium
SpeciesCryobacterium roopkundense
Strainstrain RuG17

Profile

Physiology
Gram staining propertiesGram-positive
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature16
Temperature rangepsychrotolerant
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Cryobacterium roopkundense strain RuG17 contig00226, whole genome

Gene Summary

Adenine Count

758984 bp

Thymine Count

753076 bp

Guanine Count

1418511 bp

Cytosine Count

1426244 bp

Genome Length

4356826 bp

Protein-coding Genes

3249 genes

Non-Coding Genes

52 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
deoxyguanosinetriphosphate triphosphohydrolaseGY21_00130Not AvailableNegative25087 - 2635246885.9
pp_00018GY21_00135Not AvailableNegative26345 - 27517Not Available
5s ribosomal rnaNot AvailableNot AvailablePositive28166 - 28282Not Available
dsba oxidoreductaseGY21_00145Not AvailableNegative27743 - 2839023878.2
udp pyrophosphate synthaseGY21_00150Not AvailableNegative28543 - 2935830450.3
dna recombination protein recoGY21_00155Not AvailableNegative29391 - 3011325667.7
2-isopropylmalate synthaseGY21_00165Not AvailableNegative30991 - 3275764682.1
Ncrna_class:rnase_p_rnaNot AvailableNot AvailablePositive32962 - 33366Not Available
gtpase eraGY21_00170Not AvailableNegative32928 - 3384533477.4
endoribonuclease ybeyGY21_00180Not AvailableNegative35157 - 3562116978.1

Displaying genes 21 – 30 of 3301 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.