Helicobacter pylori strain YN4-84

Gram-negativeSpirillaNon-motileMicroaerophilic

Kingdom

Pseudomonadati

Phylum

Campylobacterota

Class

Epsilonproteobacteria

Order

Campylobacterales

Family

Helicobacteraceae

Genus

Helicobacter

Description

Helicobacter pylori strain YN4-84 is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and presence of flagella, which contributes to its mobility. This strain is host-associated, primarily found within the gastrointestinal tracts of various hosts, including Homo sapiens, Gallus gallus, and other mammals and birds. The optimal growth temperature for H. pylori YN4-84 is 37°C, classifying it as mesophilic. H. pylori strain YN4-84 has a unique biotic relationship; while it is free-living, it is also pathogenic to humans, leading to numerous health complications. The strain is associated with chronic gastric inflammation, peptic ulcer disease, and several forms of gastric cancer, including gastric adenocarcinoma and mucosa-associated lymphoid tissue (MALT) lymphoma. It can also cause conditions such as GERD and functional dyspepsia, demonstrating its significant impact on gastrointestinal health. The strain possesses one replicon and has a double membrane structure, which is typical for Gram-negative bacteria. The diverse range of hosts indicates its adaptability and potential ecological significance within various environments, particularly in relation to human health and disease. Understanding the pathogenicity and health effects associated with H. pylori strain YN4-84 is essential for developing therapeutic strategies and public health interventions to manage the gastrointestinal diseases linked to this organism.

Taxonomy

KingdomPseudomonadati
PhylumCampylobacterota
ClassEpsilonproteobacteria
OrderCampylobacterales
FamilyHelicobacteraceae
GenusHelicobacter
SpeciesHelicobacter pylori
Strainstrain YN4-84

Profile

Physiology
Gram staining propertiesNegative
ShapeSpirilla
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Helicobacter pylori strain YN4-84
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsMicroaerophilic
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens, Gallus gallus, Aves
Cell arrangementSingles
SporulationNot Available
Energy sourceNot Available
PathogenicityHuman

Genome Summary

Helicobacter pylori strain YN4-84 Scaffold9, whole genome shotgun

Gene Summary

Adenine Count

499109 bp

Thymine Count

495525 bp

Guanine Count

313113 bp

Cytosine Count

314665 bp

Genome Length

1633405 bp

Protein-coding Genes

1427 genes

Non-Coding Genes

69 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
gtp cyclohydrolaseJM68_08185Not AvailablePositive1568336 - 156887820794.5
geranyl transferaseJM68_08190Not AvailablePositive1568894 - 156980534222.2
stationary phase survival protein sureJM68_08195Not AvailablePositive1569802 - 157059929804.7
hypothetical proteinJM68_08200Not AvailablePositive1570596 - 157125525916.1
6-carboxy-5,6,7,8-tetrahydropterin synthaseJM68_08205Not AvailablePositive1571259 - 157186123692.1
6-pyruvoyl tetrahydropterin synthaseJM68_08210Not AvailablePositive1571858 - 157261328790.9
hypothetical proteinJM68_08215Not AvailablePositive1572628 - 157311318367.5
membrane proteinJM68_08220Not AvailablePositive1573332 - 157531773456.4
mfs transporterJM68_08225Not AvailableNegative1575453 - 157661943256.8
cysteine abc transporter permeaseJM68_08235Not AvailableNegative1578866 - 157957926337.7

Displaying genes 1441 – 1450 of 1496 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Chronic gastric inflammationCausesPMC10226649
Gastric cancerCausesPMC10226649
Gastric ulcersCausesPMC10420633
Stomach carcinomaCausesPMC10420633
UlcersCausesPMC10420633
AdenocarcinomaCausesPMC10420633
Mucosa-associated lymphoid tissue lymphomaCausesPMC10420633
GerdCausesPMC10712878
GastritisCausesPMC10712878
Gastric cancerCausesPMC10732068

Displaying health effects 1 – 10 of 94 in total