Helicobacter pylori strain YN4-84

Gram-negativeSpirillaNon-motileMicroaerophilic

Kingdom

Pseudomonadati

Phylum

Campylobacterota

Class

Epsilonproteobacteria

Order

Campylobacterales

Family

Helicobacteraceae

Genus

Helicobacter

Description

Helicobacter pylori strain YN4-84 is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and presence of flagella, which contributes to its mobility. This strain is host-associated, primarily found within the gastrointestinal tracts of various hosts, including Homo sapiens, Gallus gallus, and other mammals and birds. The optimal growth temperature for H. pylori YN4-84 is 37°C, classifying it as mesophilic. H. pylori strain YN4-84 has a unique biotic relationship; while it is free-living, it is also pathogenic to humans, leading to numerous health complications. The strain is associated with chronic gastric inflammation, peptic ulcer disease, and several forms of gastric cancer, including gastric adenocarcinoma and mucosa-associated lymphoid tissue (MALT) lymphoma. It can also cause conditions such as GERD and functional dyspepsia, demonstrating its significant impact on gastrointestinal health. The strain possesses one replicon and has a double membrane structure, which is typical for Gram-negative bacteria. The diverse range of hosts indicates its adaptability and potential ecological significance within various environments, particularly in relation to human health and disease. Understanding the pathogenicity and health effects associated with H. pylori strain YN4-84 is essential for developing therapeutic strategies and public health interventions to manage the gastrointestinal diseases linked to this organism.

Taxonomy

KingdomPseudomonadati
PhylumCampylobacterota
ClassEpsilonproteobacteria
OrderCampylobacterales
FamilyHelicobacteraceae
GenusHelicobacter
SpeciesHelicobacter pylori
Strainstrain YN4-84

Profile

Physiology
Gram staining propertiesNegative
ShapeSpirilla
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Helicobacter pylori strain YN4-84
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsMicroaerophilic
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens, Gallus gallus, Aves
Cell arrangementSingles
SporulationNot Available
Energy sourceNot Available
PathogenicityHuman

Genome Summary

Helicobacter pylori strain YN4-84 Scaffold9, whole genome shotgun

Gene Summary

Adenine Count

499109 bp

Thymine Count

495525 bp

Guanine Count

313113 bp

Cytosine Count

314665 bp

Genome Length

1633405 bp

Protein-coding Genes

1427 genes

Non-Coding Genes

69 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
50s ribosomal protein l4JM68_07735Not AvailableNegative1476747 - 147739424008.8
50s ribosomal protein l3JM68_07740Not AvailableNegative1477429 - 147800421192.8
30s ribosomal protein s10JM68_07745Not AvailableNegative1478041 - 147835511918.5
atp-binding proteinJM68_07750Not AvailablePositive1478564 - 147964641639.3
hypothetical proteinJM68_07755Not AvailablePositive1479907 - 148048522005.0
ribonuclease hiiJM68_07760Not AvailableNegative1480459 - 148107322765.9
hypothetical proteinJM68_07765Not AvailableNegative1481104 - 14813559509.36
fumarate hydrataseJM68_07770Not AvailableNegative1481377 - 148276850968.7
copper resistance proteinJM68_07775Not AvailablePositive1482944 - 148332113914.4
membrane proteinJM68_07780Not AvailablePositive1483326 - 148456447147.9

Displaying genes 1361 – 1370 of 1496 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Chronic gastric inflammationCausesPMC10226649
Gastric cancerCausesPMC10226649
Gastric ulcersCausesPMC10420633
Stomach carcinomaCausesPMC10420633
UlcersCausesPMC10420633
AdenocarcinomaCausesPMC10420633
Mucosa-associated lymphoid tissue lymphomaCausesPMC10420633
GerdCausesPMC10712878
GastritisCausesPMC10712878
Gastric cancerCausesPMC10732068

Displaying health effects 1 – 10 of 94 in total