Thalassospira profundimaris strain R4-5

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodospirillales

Family

Thalassospiraceae

Genus

Thalassospira

Description

Thalassospira profundimaris strain R4-5 is a Gram-negative, rod-shaped bacterium. This strain is characterized by having a single replicon, which is relevant for its genetic stability and replication processes. The genomic data for Thalassospira profundimaris strain R4-5 is cataloged under the accession number JPWC00000000.1. The classification of Thalassospira profundimaris within the Thalassospira genus suggests its adaptation to marine environments, specifically deep-sea habitats. The Gram-negative nature of this bacterium indicates that it possesses a thin peptidoglycan layer and an outer membrane, traits common among marine microorganisms that may contribute to their survival in harsh conditions. The ecological role of Thalassospira profundimaris strain R4-5, while not detailed here, can be inferred to involve interactions within its marine ecosystem. Gram-negative bacteria often participate in biogeochemical cycles, including nutrient recycling and organic matter decomposition. Consequently, Thalassospira profundimaris may play a significant role in the microbial community dynamics of deep-sea environments, influencing nutrient availability and supporting the overall functioning of marine ecosystems. Further studies would be needed to elucidate its specific ecological interactions and functional capabilities.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodospirillales
FamilyThalassospiraceae
GenusThalassospira
SpeciesThalassospira profundimaris
Strainstrain R4-5

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Thalassospira profundimaris strain R4-5 contig42, whole genome

Gene Summary

Adenine Count

1012525 bp

Thymine Count

1006943 bp

Guanine Count

1230208 bp

Cytosine Count

1243730 bp

Genome Length

4493406 bp

Protein-coding Genes

3760 genes

Non-Coding Genes

66 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
dienelactone hydrolaseTH8_15170Not AvailableNegative3125566 - 312622223334.9
hypothetical proteinTH8_15175Not AvailableNegative3126305 - 312727934115.0
4-oxalomesaconate tautomeraseTH8_15185Not AvailableNegative3129403 - 313044035747.0
hypothetical proteinTH8_15190Not AvailableNegative3130472 - 313114623865.1
glcnac-pi de-n-acetylaseTH8_15195Not AvailableNegative3131146 - 313188328086.0
hypothetical proteinTH8_15200Not AvailablePositive3132020 - 313324345148.3
3-hydroxyisobutyrate dehydrogenaseTH8_15205Not AvailablePositive3133409 - 313430231384.9
catechol 1,2-dioxygenaseTH8_15210Not AvailableNegative3134392 - 313535436059.3
c4-dicarboxylate abc transporter permeaseTH8_15215Not AvailableNegative3135395 - 313668144950.2
c4-dicarboxylate abc transporter substrate-binding proteinTH8_15225Not AvailableNegative3137214 - 313823636796.8

Displaying genes 2681 – 2690 of 3826 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.