Thalassospira profundimaris strain R4-5

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodospirillales

Family

Thalassospiraceae

Genus

Thalassospira

Description

Thalassospira profundimaris strain R4-5 is a Gram-negative, rod-shaped bacterium. This strain is characterized by having a single replicon, which is relevant for its genetic stability and replication processes. The genomic data for Thalassospira profundimaris strain R4-5 is cataloged under the accession number JPWC00000000.1. The classification of Thalassospira profundimaris within the Thalassospira genus suggests its adaptation to marine environments, specifically deep-sea habitats. The Gram-negative nature of this bacterium indicates that it possesses a thin peptidoglycan layer and an outer membrane, traits common among marine microorganisms that may contribute to their survival in harsh conditions. The ecological role of Thalassospira profundimaris strain R4-5, while not detailed here, can be inferred to involve interactions within its marine ecosystem. Gram-negative bacteria often participate in biogeochemical cycles, including nutrient recycling and organic matter decomposition. Consequently, Thalassospira profundimaris may play a significant role in the microbial community dynamics of deep-sea environments, influencing nutrient availability and supporting the overall functioning of marine ecosystems. Further studies would be needed to elucidate its specific ecological interactions and functional capabilities.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodospirillales
FamilyThalassospiraceae
GenusThalassospira
SpeciesThalassospira profundimaris
Strainstrain R4-5

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Thalassospira profundimaris strain R4-5 contig42, whole genome

Gene Summary

Adenine Count

1012525 bp

Thymine Count

1006943 bp

Guanine Count

1230208 bp

Cytosine Count

1243730 bp

Genome Length

4493406 bp

Protein-coding Genes

3760 genes

Non-Coding Genes

66 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
nitrogen fixation protein fixgTH8_10775Not AvailablePositive2226369 - 222787456404.9
integral membrane protein linked to a cation pumpTH8_10780Not AvailablePositive2227909 - 222842718907.4
cytochrome oxidase maturation protein cbb3TH8_10790Not AvailablePositive2230852 - 22310406937.3
crp/fnr family transcriptional regulatorTH8_10795Not AvailablePositive2231155 - 223181724790.7
3-methyl-2-oxobutanoate hydroxymethyltransferaseTH8_10800Not AvailablePositive2232033 - 223287829809.0
pantoate--beta-alanine ligaseTH8_10805Not AvailablePositive2232933 - 223380231365.9
rna-binding proteinTH8_10810Not AvailablePositive2234047 - 223553452800.6
30s ribosomal protein s16TH8_10815Not AvailablePositive2235683 - 223609314699.5
16s rrna processing protein rimmTH8_10820Not AvailablePositive2236141 - 223681524108.4
trna (guanine-n1)-methyltransferaseTH8_10825Not AvailablePositive2236819 - 223753526533.6

Displaying genes 1921 – 1930 of 3826 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.