Serratia nematodiphila DZ0503SBS1 strain DSM 21420

Gram-negativeRod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Yersiniaceae

Genus

Serratia

Description

Serratia nematodiphila strain DZ0503SBS1, classified under DSM 21420, is a Gram-negative, rod-shaped bacterium characterized by the presence of flagella, which suggests motility. This strain is significant due to its single replicon structure, indicating a streamlined genetic organization. The strain's accession number is JPUX00000000.1, which serves as a reference for its genomic data in biological databases. Serratia nematodiphila is part of the broader Serratia genus, known for its diverse ecological roles, particularly in soil and plant-associated environments. The presence of flagella in Serratia nematodiphila implies that this bacterium can actively move toward nutrients or other favorable conditions, which may enhance its survival and competitiveness in various ecosystems. The motility also suggests a potential for interaction with nematodes, as indicated by the species name, which could imply a specific ecological niche or symbiotic relationship. In summary, Serratia nematodiphila DZ0503SBS1 showcases unique traits, such as Gram-negative characteristics, rod shape, and motility, that contribute to its ecological dynamics within its environment. Understanding these traits can provide insights into the bacterium's role in soil health and its interactions with other organisms.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyYersiniaceae
GenusSerratia
SpeciesSerratia nematodiphila
StrainDZ0503SBS1 strain DSM 21420

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Serratia nematodiphila DZ0503SBS1 strain DSM 21420
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Serratia nematodiphila DZ0503SBS1 strain DSM 21420 Contig002,

Gene Summary

Adenine Count

1052357 bp

Thymine Count

1061850 bp

Guanine Count

1574323 bp

Cytosine Count

1536390 bp

Genome Length

5224920 bp

Protein-coding Genes

4602 genes

Non-Coding Genes

145 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
guanosine 5'-monophosphate oxidoreductaseJL05_04660Not AvailablePositive1010048 - 101109137483.2
type iv pilin biogenesis proteinJL05_04665Not AvailableNegative1011144 - 101234344433.2
transporter hofbJL05_04670Not AvailableNegative1012340 - 101378252713.8
major pilin subunitJL05_04675Not AvailableNegative1013788 - 101422515390.8
nicotinate-nucleotide pyrophosphorylaseJL05_04680Not AvailableNegative1014414 - 101530432609.1
n-acetyl-anhydromuranmyl-l-alanine amidaseJL05_04685Not AvailablePositive1015389 - 101598522266.2
regulatory protein ampeJL05_04690Not AvailablePositive1015985 - 101683932424.0
glutamate-1-semialdehyde aminotransferaseJL05_04695Not AvailableNegative1016900 - 101818945870.4
h(+)/cl(-) exchange transporter clcaJL05_04700Not AvailablePositive1018397 - 101980349296.6
iron-sulfur cluster insertion protein erpaJL05_04705Not AvailablePositive1019893 - 102023712203.4

Displaying genes 931 – 940 of 4747 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.