Streptomyces scabiei strain NCPPB 4086

Gram-positiveTailedMotileAerobic

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Kitasatosporales

Family

Streptomycetaceae

Genus

Streptomyces

Description

Streptomyces scabiei strain NCPPB 4086 is a Gram-positive, aerobic bacterium characterized by its tailed shape and motility, facilitated by the presence of flagella. This strain thrives in terrestrial habitats and is classified as mesophilic, indicating its optimal growth temperature falls within a moderate range. It possesses a single replicon and is known to be free-living. S. scabiei is pathogenic to various plant hosts, including members of the Viridiplantae such as Solanum tuberosum (potato), Ipomoea batatas (sweet potato), Raphanus sativus (radish), Arachis hypogaea (peanut), Brassica rapa subsp. rapa (turnip), and Beta vulgaris (beet). The bacterium is primarily associated with the development of scab lesions, notably causing common scab disease in potatoes, a condition that can significantly impact crop yield and quality. The ability of S. scabiei to sporulate suggests it can endure adverse environmental conditions, contributing to its survival in agricultural settings. Its pathogenicity highlights the ecological role this bacterium plays in plant health, where it can act as a pathogen, affecting not only individual plants but potentially influencing agricultural practices and crop management strategies. Understanding the traits and behaviors of S. scabiei is essential for developing effective disease management approaches in affected crops, thereby mitigating its impact on food production.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderKitasatosporales
FamilyStreptomycetaceae
GenusStreptomyces
SpeciesStreptomyces scabiei
Strainstrain NCPPB 4086

Profile

Physiology
Gram staining propertiesPositive
ShapeTailed
MobilityYes
Flagellar presenceYes
Number of membranesNot Available
Image of Streptomyces scabiei strain NCPPB 4086
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAerobic
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatTerrestrial
Biotic relationshipFree living
Host(s)Viridiplantae, Solanum tuberosum, Daucus carota
Cell arrangementNot Available
SporulationSporulating
Energy sourceNot Available
PathogenicityPlant

Genome Summary

Streptomyces scabiei strain NCPPB 4086 scf_65433_401.1_contig_15,

Gene Summary

Adenine Count

1527745 bp

Thymine Count

1541430 bp

Guanine Count

3712549 bp

Cytosine Count

3680302 bp

Genome Length

10462026 bp

Protein-coding Genes

8097 genes

Non-Coding Genes

92 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
tetr family transcriptional regulatorIQ62_30900Not AvailableNegative6903266 - 690392524303.9
membrane proteinIQ62_30910Not AvailableNegative6904347 - 690570949063.9
hypothetical proteinIQ62_30915Not AvailablePositive6905883 - 690653623711.2
cbxx/cfqxIQ62_30920Not AvailablePositive6906971 - 690884568420.3
hypothetical proteinIQ62_30925Not AvailableNegative6908974 - 691005539163.2
membrane proteinIQ62_30930Not AvailableNegative6910052 - 691139547454.6
membrane proteinIQ62_30935Not AvailableNegative6911665 - 691212916361.1
atp phosphoribosyltransferaseIQ62_30940Not AvailableNegative6912150 - 691300730779.0
phosphoribosyl-atp pyrophosphataseIQ62_30945Not AvailableNegative6913058 - 69133309934.84
6,7-dimethyl-8-ribityllumazine synthaseIQ62_30950Not AvailableNegative6913365 - 691385016898.2

Displaying genes 5401 – 5410 of 8189 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Scab lesionsCausesPMC11609053
Potato common scabCausesPMC11818755
Common scabCausesPMC11818755
Potato common scab (cs)CausesPMC11818755
Common scabCausesPMC12542781
Common scab diseaseCausesPMC12648119
CsCausesPMC12648119
Common scabCausesPMC12879927
Common and acid scabCausesPMC12879927
Potato scabCausesPMC4664631

Displaying health effects 1 – 10 of 14 in total