Streptomyces scabiei strain NCPPB 4086

Gram-positiveTailedMotileAerobic

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Kitasatosporales

Family

Streptomycetaceae

Genus

Streptomyces

Description

Streptomyces scabiei strain NCPPB 4086 is a Gram-positive, aerobic bacterium characterized by its tailed shape and motility, facilitated by the presence of flagella. This strain thrives in terrestrial habitats and is classified as mesophilic, indicating its optimal growth temperature falls within a moderate range. It possesses a single replicon and is known to be free-living. S. scabiei is pathogenic to various plant hosts, including members of the Viridiplantae such as Solanum tuberosum (potato), Ipomoea batatas (sweet potato), Raphanus sativus (radish), Arachis hypogaea (peanut), Brassica rapa subsp. rapa (turnip), and Beta vulgaris (beet). The bacterium is primarily associated with the development of scab lesions, notably causing common scab disease in potatoes, a condition that can significantly impact crop yield and quality. The ability of S. scabiei to sporulate suggests it can endure adverse environmental conditions, contributing to its survival in agricultural settings. Its pathogenicity highlights the ecological role this bacterium plays in plant health, where it can act as a pathogen, affecting not only individual plants but potentially influencing agricultural practices and crop management strategies. Understanding the traits and behaviors of S. scabiei is essential for developing effective disease management approaches in affected crops, thereby mitigating its impact on food production.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderKitasatosporales
FamilyStreptomycetaceae
GenusStreptomyces
SpeciesStreptomyces scabiei
Strainstrain NCPPB 4086

Profile

Physiology
Gram staining propertiesPositive
ShapeTailed
MobilityYes
Flagellar presenceYes
Number of membranesNot Available
Image of Streptomyces scabiei strain NCPPB 4086
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAerobic
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatTerrestrial
Biotic relationshipFree living
Host(s)Viridiplantae, Solanum tuberosum, Daucus carota
Cell arrangementNot Available
SporulationSporulating
Energy sourceNot Available
PathogenicityPlant

Genome Summary

Streptomyces scabiei strain NCPPB 4086 scf_65433_401.1_contig_15,

Gene Summary

Adenine Count

1527745 bp

Thymine Count

1541430 bp

Guanine Count

3712549 bp

Cytosine Count

3680302 bp

Genome Length

10462026 bp

Protein-coding Genes

8097 genes

Non-Coding Genes

92 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
gntr family transcriptional regulatorIQ62_21520Not AvailableNegative4732482 - 473328229394.6
sugar abc transporter substrate-binding proteinIQ62_21525Not AvailablePositive4733657 - 473502448209.9
abc transporter permeaseIQ62_21530Not AvailablePositive4735021 - 473593532492.7
abc transporter permeaseIQ62_21535Not AvailablePositive4736054 - 473690830896.6
hypothetical proteinIQ62_21540Not AvailablePositive4736994 - 473899474133.4
hypothetical proteinIQ62_21545Not AvailablePositive4738991 - 473933813583.8
amidohydrolaseIQ62_21550Not AvailablePositive4739374 - 474029433499.8
membrane proteinIQ62_21555Not AvailableNegative4740719 - 474154928577.0
hypothetical proteinIQ62_21570Not AvailablePositive4743321 - 474384218548.5
peptide abc transporter atp-binding proteinIQ62_21575Not AvailablePositive4743839 - 474465429539.6

Displaying genes 3821 – 3830 of 8189 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Scab lesionsCausesPMC11609053
Potato common scabCausesPMC11818755
Common scabCausesPMC11818755
Potato common scab (cs)CausesPMC11818755
Common scabCausesPMC12542781
Common scab diseaseCausesPMC12648119
CsCausesPMC12648119
Common scabCausesPMC12879927
Common and acid scabCausesPMC12879927
Potato scabCausesPMC4664631

Displaying health effects 1 – 10 of 14 in total