Sphingobium yanoikuyae strain B1

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingobiaceae

Genus

Sphingobium

Description

Sphingobium yanoikuyae strain B1 is a bacterium characterized by the presence of flagella, which suggests it possesses motility. This trait can be significant for its ecological interactions and adaptability in various environments. The strain contains two replicons, indicating a complex genetic architecture that may facilitate its metabolic versatility and resilience. The strain's genomic information is accessible through two key accession numbers: JPOU00000000.1 and JGVR00000000.1. These accession numbers provide a gateway for researchers to explore the genetic makeup and functional capabilities of Sphingobium yanoikuyae strain B1 in detail. Sphingobium yanoikuyae is known for its role in the degradation of environmental pollutants, particularly aromatic compounds. The presence of flagella in strain B1 may enhance its ability to navigate towards and metabolize such substrates, thus playing a critical role in bioremediation efforts. The dual replicon system may also allow for more efficient regulation and expression of genes involved in the degradation pathways. In summary, Sphingobium yanoikuyae strain B1's motility and genetic structure suggest a well-adapted microorganism capable of thriving in complex environments. Its potential utility in bioremediation highlights the importance of understanding the ecological roles of such bacteria in addressing environmental challenges.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingobiaceae
GenusSphingobium
SpeciesSphingobium yanoikuyae
Strainstrain B1

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingobium yanoikuyae strain B1 contig94, whole genome shotgun

Gene Summary

Adenine Count

914785 bp

Thymine Count

911779 bp

Guanine Count

1652245 bp

Cytosine Count

1677338 bp

Genome Length

5156147 bp

Protein-coding Genes

4582 genes

Non-Coding Genes

77 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
iron abc transporterIH86_04790Not AvailableNegative1043478 - 104433830334.0
tonb-dependent receptorIH86_04795Not AvailablePositive1044734 - 104668970200.5
metal-binding proteinIH86_04800Not AvailablePositive1046689 - 104709614666.4
nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferaseIH86_04805Not AvailablePositive1047093 - 104810634138.1
phosphoglycerate mutaseIH86_04810Not AvailablePositive1048103 - 104867220377.6
cobalamin synthaseIH86_04815Not AvailablePositive1048669 - 104938825342.3
aminotransferaseIH86_04820Not AvailablePositive1049385 - 105036834988.0
adenosylcobinamide-phosphate synthaseIH86_04825Not AvailablePositive1050361 - 105131434104.8
cobalamin biosynthesis proteinIH86_04830Not AvailablePositive1051311 - 105181717371.9
2,3,4,5-tetrahydropyridine-2,6-carboxylate n-succinyltransferaseIH86_04835Not AvailableNegative1051846 - 105268529604.5

Displaying genes 921 – 930 of 10049 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.