Xanthomonas hyacinthi DSM 19077

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Lysobacterales

Family

Lysobacteraceae

Genus

Xanthomonas

Description

Xanthomonas hyacinthi DSM 19077 is a rod-shaped bacterium characterized by the presence of flagella, which likely contributes to its motility. This species has a single replicon, indicating a streamlined genomic organization, and is associated with the accession number JPLD00000000.1 in genetic databases. As a member of the Xanthomonadaceae family, Xanthomonas hyacinthi is known for its role as a plant pathogen, particularly affecting hyacinth plants. The presence of flagella suggests that it can move towards favorable environments or host plants, which may enhance its pathogenicity. The single replicon may provide insights into its evolutionary adaptations and metabolic capabilities, potentially reflecting a specialized lifestyle aligned with its ecological niche. In terms of biological and ecological insight, the attributes of Xanthomonas hyacinthi, including its rod shape and flagella, suggest that it is well-adapted for its interactions within plant environments. This adaptation may facilitate colonization and infection in plant hosts, contributing to its status as a significant pathogen in agricultural settings. Understanding the fundamental traits of this bacterium can aid in developing strategies for managing diseases it may cause in hyacinths and related plants.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderLysobacterales
FamilyLysobacteraceae
GenusXanthomonas
SpeciesXanthomonas hyacinthi
StrainDSM 19077

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Xanthomonas hyacinthi DSM 19077
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Xanthomonas hyacinthi DSM 19077 Contig_1468, whole genome shotgun

Gene Summary

Adenine Count

1492811 bp

Thymine Count

1489290 bp

Guanine Count

2932281 bp

Cytosine Count

2937688 bp

Genome Length

8852388 bp

Protein-coding Genes

7195 genes

Non-Coding Genes

107 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
(2fe-2s)-binding proteinY886_03660Not AvailablePositive782542 - 7827788364.24
oxidoreductaseY886_03665Q59160Positive782771 - 78411146606.4
dihydrodipicolinate synthetaseY886_03670Q3APU0Positive784116 - 78502132141.1
ketoglutarate semialdehyde dehydrogenaseY886_03675Q08IC0Positive785023 - 78661554428.8
x-pro dipeptidaseY886_03680Q5HNJ7Positive786612 - 78782042907.6
hypothetical proteinY886_03685Not AvailablePositive787885 - 78971467314.1
hypothetical proteinY886_03690Not AvailablePositive789711 - 79153768365.7
phosphoprotein phosphataseY886_03695O34779Positive791565 - 79227125569.3
hypothetical proteinY886_03710Not AvailableNegative795368 - 79639637085.6
arac family transcriptional regulatorY886_03720P49322Negative797733 - 79868034957.8

Displaying genes 651 – 660 of 6378 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

297 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000315acetylpyruvateC5H6O4Chemical structure of acetylpyruvateNot available
Average130.099Da
Monoisotopic130.0266087Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000399(S)-allantoinC4H6N4O3Chemical structure of (S)-allantoin97-59-6
Average158.1154Da
Monoisotopic158.0439901Da

Displaying 1–10 of 297 metabolites

Health Effects

No health effects information available for this bacterium.