Xanthomonas hyacinthi DSM 19077

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Lysobacterales

Family

Lysobacteraceae

Genus

Xanthomonas

Description

Xanthomonas hyacinthi DSM 19077 is a rod-shaped bacterium characterized by the presence of flagella, which likely contributes to its motility. This species has a single replicon, indicating a streamlined genomic organization, and is associated with the accession number JPLD00000000.1 in genetic databases. As a member of the Xanthomonadaceae family, Xanthomonas hyacinthi is known for its role as a plant pathogen, particularly affecting hyacinth plants. The presence of flagella suggests that it can move towards favorable environments or host plants, which may enhance its pathogenicity. The single replicon may provide insights into its evolutionary adaptations and metabolic capabilities, potentially reflecting a specialized lifestyle aligned with its ecological niche. In terms of biological and ecological insight, the attributes of Xanthomonas hyacinthi, including its rod shape and flagella, suggest that it is well-adapted for its interactions within plant environments. This adaptation may facilitate colonization and infection in plant hosts, contributing to its status as a significant pathogen in agricultural settings. Understanding the fundamental traits of this bacterium can aid in developing strategies for managing diseases it may cause in hyacinths and related plants.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderLysobacterales
FamilyLysobacteraceae
GenusXanthomonas
SpeciesXanthomonas hyacinthi
StrainDSM 19077

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Xanthomonas hyacinthi DSM 19077
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Xanthomonas hyacinthi DSM 19077


Gene Summary

Adenine Count

1492811 bp

Thymine Count

1489290 bp

Guanine Count

2932281 bp

Cytosine Count

2937688 bp

Genome Length

8852388 bp

Protein-coding Genes

7195 genes

Non-Coding Genes

107 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
Major capsid proteinY886_19515Not AvailableNegative4233680 - 423491543631.6
Gp77Y886_19520Not AvailableNegative4234918 - 423576629237.7
Portal proteinY886_19525Not AvailableNegative4235744 - 423703346952.9
Gp79Y886_19530Not AvailableNegative4237042 - 423871261314.4
Restriction endonucleaseY886_19540Not AvailableNegative4239374 - 423967611361.7
Hypothetical proteinY886_19545Not AvailableNegative4239863 - 424034517263.7
Glycoside hydrolase family 19 proteinY886_19555O64203Negative4240667 - 424118519336.9
hypothetical proteinY886_19560Not AvailableNegative4241407 - 424195220082.6
Gp24Y886_19565Not AvailableNegative4242056 - 424271824016.8
2-nitropropane dioxygenaseY886_00005B2TEK6Positive106 - 116435762.9

Displaying genes 11 – 20 of 6378 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

297 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000315acetylpyruvateC5H6O4Chemical structure of acetylpyruvateNot available
Average130.099Da
Monoisotopic130.0266087Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000399(S)-allantoinC4H6N4O3Chemical structure of (S)-allantoin97-59-6
Average158.1154Da
Monoisotopic158.0439901Da

Displaying 1–10 of 297 metabolites

Health Effects

No health effects information available for this bacterium.