Dyella japonica DSM 16301

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Lysobacterales

Family

Rhodanobacteraceae

Genus

Dyella

Description

Dyella japonica DSM 16301 is a Gram-negative bacterium characterized by its rod-shaped morphology. It is notably classified as a member of the genus Dyella and has been assigned the DSM number 16301. This species possesses a single replicon, indicating a relatively simple genomic structure, which may contribute to its adaptability in varying environmental conditions. The strain is cataloged under the accession number JPLA00000000.1, providing a reference for genetic and genomic studies. As a Gram-negative organism, Dyella japonica is expected to possess a thin peptidoglycan layer surrounded by an outer membrane, which typically contains lipopolysaccharides. These structural features are significant as they influence the bacterium's interactions with its environment, including aspects of pathogenicity and resistance to antibiotics. In terms of ecological significance, the presence of Dyella japonica in various habitats may play a role in nutrient cycling and interactions with other microbial communities. Gram-negative bacteria are often involved in the degradation of complex organic materials, suggesting that Dyella japonica may contribute to biogeochemical processes in its native ecosystem. Understanding the specific ecological roles of such microorganisms is essential for appreciating their contributions to biodiversity and ecosystem functioning.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderLysobacterales
FamilyRhodanobacteraceae
GenusDyella
SpeciesDyella japonica
StrainDSM 16301

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Dyella japonica DSM 16301 Contig_222, whole genome shotgun

Gene Summary

Adenine Count

763866 bp

Thymine Count

757682 bp

Guanine Count

1359462 bp

Cytosine Count

1356651 bp

Genome Length

4237705 bp

Protein-coding Genes

3328 genes

Non-Coding Genes

49 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
16s rrna methyltransferaseY882_12625Not AvailablePositive2819401 - 282032433102.6
cell division protein ftslY882_12630Not AvailablePositive2820321 - 282059310389.7
cell division proteinY882_12635Not AvailablePositive2820590 - 282240165114.6
udp-n-acetylmuramoylalanyl-d-glutamate--2, 6-diaminopimelate ligaseY882_12640Not AvailablePositive2822398 - 282387051773.7
udp-n-acetylmuramoyl-tripeptide--d-alanyl-d- alanine ligaseY882_12645Not AvailablePositive2823867 - 282523747135.5
phospho-n-acetylmuramoyl-pentapeptide- transferaseY882_12650Not AvailablePositive2825227 - 282632739737.9
cell division protein ftswY882_12655Not AvailablePositive2826329 - 282756744349.6
udp-diphospho-muramoylpentapeptide beta-n- acetylglucosaminyltransferaseY882_12660Not AvailablePositive2827564 - 282863737460.0
udp-n-acetylmuramate--alanine ligaseY882_12665Not AvailablePositive2828634 - 283007351392.4
d-alanine--d-alanine ligaseY882_12670Not AvailablePositive2830070 - 283100533468.1

Displaying genes 2251 – 2260 of 3377 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.