Dyella japonica DSM 16301

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Lysobacterales

Family

Rhodanobacteraceae

Genus

Dyella

Description

Dyella japonica DSM 16301 is a Gram-negative bacterium characterized by its rod-shaped morphology. It is notably classified as a member of the genus Dyella and has been assigned the DSM number 16301. This species possesses a single replicon, indicating a relatively simple genomic structure, which may contribute to its adaptability in varying environmental conditions. The strain is cataloged under the accession number JPLA00000000.1, providing a reference for genetic and genomic studies. As a Gram-negative organism, Dyella japonica is expected to possess a thin peptidoglycan layer surrounded by an outer membrane, which typically contains lipopolysaccharides. These structural features are significant as they influence the bacterium's interactions with its environment, including aspects of pathogenicity and resistance to antibiotics. In terms of ecological significance, the presence of Dyella japonica in various habitats may play a role in nutrient cycling and interactions with other microbial communities. Gram-negative bacteria are often involved in the degradation of complex organic materials, suggesting that Dyella japonica may contribute to biogeochemical processes in its native ecosystem. Understanding the specific ecological roles of such microorganisms is essential for appreciating their contributions to biodiversity and ecosystem functioning.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderLysobacterales
FamilyRhodanobacteraceae
GenusDyella
SpeciesDyella japonica
StrainDSM 16301

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Dyella japonica DSM 16301 Contig_222, whole genome shotgun

Gene Summary

Adenine Count

763866 bp

Thymine Count

757682 bp

Guanine Count

1359462 bp

Cytosine Count

1356651 bp

Genome Length

4237705 bp

Protein-coding Genes

3328 genes

Non-Coding Genes

49 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
udp-glucose 4-epimeraseY882_08845Not AvailablePositive1975793 - 197679736038.9
hypothetical proteinY882_08850Not AvailablePositive1976890 - 197854561502.7
hypothetical proteinY882_08855Not AvailablePositive1978622 - 197998448430.9
rna helicaseY882_08865Not AvailablePositive1982664 - 198518091692.6
d-galactose transporter galpY882_08870Not AvailableNegative1985242 - 198658549260.5
gluconolaconaseY882_08875Not AvailableNegative1986698 - 198760332557.2
3-oxoacyl-acp reductaseY882_08880Not AvailableNegative1987600 - 198836127471.8
galactonate dehydrataseY882_08885Not AvailableNegative1988364 - 198951242169.7
2-dehydro-3-deoxy-6-phosphogalactonate aldolaseY882_08890Not AvailableNegative1989509 - 199014721906.4
2-keto-3-deoxy-galactonokinaseY882_08895Not AvailableNegative1990152 - 199107232195.6

Displaying genes 1591 – 1600 of 3377 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.