Xanthomonas axonopodis pv. vasculorum strain NCPPB 900

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Lysobacterales

Family

Lysobacteraceae

Genus

Xanthomonas

Description

Xanthomonas axonopodis pv. vasculorum strain NCPPB 900 is a rod-shaped bacterium known for its pathogenic effects on plants, particularly its host, Solanum lycopersicum, commonly known as tomato. This strain possesses a single replicon, indicating a streamlined genetic organization that is typical for many bacteria within the Xanthomonas genus. One of the notable health effects attributed to this strain is the causation of bacterial spot of tomato, a significant disease that can lead to reduced crop yields and quality. The presence of flagella suggests that this bacterium is motile, which may play a role in its ability to colonize plant surfaces and facilitate infection. The accession number for this strain is JPHD00000000.2, which serves as a reference for genetic and genomic information specific to this isolate. Understanding the genetics and pathogenic mechanisms of Xanthomonas axonopodis pv. vasculorum is crucial for developing effective management strategies for bacterial spot disease in tomatoes. Ecologically, the interactions between X. axonopodis pv. vasculorum and its host plant underscore the importance of bacterial pathogens in agricultural systems. Such relationships can significantly impact plant health and agricultural productivity, highlighting the need for ongoing research and monitoring to mitigate the effects of this pathogen on tomato crops.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderLysobacterales
FamilyLysobacteraceae
GenusXanthomonas
SpeciesXanthomonas axonopodis
Strainpv. vasculorum strain NCPPB 900

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Xanthomonas axonopodis pv. vasculorum strain NCPPB 900
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Solanum lycopersicum
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Xanthomonas axonopodis pv. vasculorum strain NCPPB 900

Gene Summary

Adenine Count

857500 bp

Thymine Count

858008 bp

Guanine Count

1530875 bp

Cytosine Count

1532980 bp

Genome Length

4779570 bp

Protein-coding Genes

3533 genes

Non-Coding Genes

123 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
tat pathway signal proteinGW15_0219255Not AvailablePositive4096981 - 409844454288.4
alpha-mannosidaseGW15_0219260Not AvailablePositive4098530 - 410087285612.7
beta-galactosidaseGW15_0219265Not AvailablePositive4101152 - 410299367320.8
type iii secretion system effector proteinGW15_0219270Not AvailableNegative4103043 - 410546084321.1
hypothetical proteinGW15_0219275Not AvailablePositive4105659 - 410599412534.8
hypothetical proteinGW15_0219280Not AvailablePositive4106195 - 41063957006.25
r body protein rebb-like proteinGW15_0219285Not AvailableNegative4106453 - 410678211192.0
exported exo-alpha-sialidaseGW15_0219290Not AvailablePositive4107385 - 410854541842.4
copper homeostasis protein cutcGW15_0219300Not AvailableNegative4110720 - 411145125484.9
n(4)-(beta-n-acetylglucosaminyl)-l-asparaginaseGW15_0219305Not AvailableNegative4111448 - 411251237530.9

Displaying genes 3201 – 3210 of 3656 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Bacterial spot of tomatoCausesPMC6946519

Displaying health effects 1 – 1 of 1 in total