Xanthomonas axonopodis pv. vasculorum strain NCPPB 900

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Lysobacterales

Family

Lysobacteraceae

Genus

Xanthomonas

Description

Xanthomonas axonopodis pv. vasculorum strain NCPPB 900 is a rod-shaped bacterium known for its pathogenic effects on plants, particularly its host, Solanum lycopersicum, commonly known as tomato. This strain possesses a single replicon, indicating a streamlined genetic organization that is typical for many bacteria within the Xanthomonas genus. One of the notable health effects attributed to this strain is the causation of bacterial spot of tomato, a significant disease that can lead to reduced crop yields and quality. The presence of flagella suggests that this bacterium is motile, which may play a role in its ability to colonize plant surfaces and facilitate infection. The accession number for this strain is JPHD00000000.2, which serves as a reference for genetic and genomic information specific to this isolate. Understanding the genetics and pathogenic mechanisms of Xanthomonas axonopodis pv. vasculorum is crucial for developing effective management strategies for bacterial spot disease in tomatoes. Ecologically, the interactions between X. axonopodis pv. vasculorum and its host plant underscore the importance of bacterial pathogens in agricultural systems. Such relationships can significantly impact plant health and agricultural productivity, highlighting the need for ongoing research and monitoring to mitigate the effects of this pathogen on tomato crops.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderLysobacterales
FamilyLysobacteraceae
GenusXanthomonas
SpeciesXanthomonas axonopodis
Strainpv. vasculorum strain NCPPB 900

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Xanthomonas axonopodis pv. vasculorum strain NCPPB 900
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Solanum lycopersicum
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Xanthomonas axonopodis pv. vasculorum strain NCPPB 900


Gene Summary

Adenine Count

857500 bp

Thymine Count

858008 bp

Guanine Count

1530875 bp

Cytosine Count

1532980 bp

Genome Length

4779570 bp

Protein-coding Genes

3533 genes

Non-Coding Genes

123 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
Putative zonula occludens toxinGW15_0219610Not AvailablePositive4179245 - 418057948699.0
hypothetical proteinGW15_0219615Not AvailablePositive4180664 - 418094510643.8
chloride channel proteinGW15_0219620Not AvailableNegative4181215 - 418152611579.9
Hypothetical proteinGW15_0219625Not AvailableNegative4181593 - 418191912344.1
Putative transposaseGW15_0219635Not AvailableNegative4182400 - 418272312401.0
membrane proteinGW15_0219650Not AvailableNegative4183377 - 418382316560.0
Hypothetical proteinGW15_0219655Not AvailablePositive4183898 - 418450022640.8
AttrNot AvailableNot AvailablePositive4195692 - 4195703Not Available
Ncrna_class:otherNot AvailableNot AvailablePositive105 - 178Not Available
5s ribosomal rnaNot AvailableNot AvailablePositive185 - 299Not Available

Displaying genes 11 – 20 of 3656 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Bacterial spot of tomatoCausesPMC6946519

Displaying health effects 1 – 1 of 1 in total