Polaribacter sp. Hel1_85 PHEL85d

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Flavobacteriia

Order

Flavobacteriales

Family

Flavobacteriaceae

Genus

Polaribacter

Description

Polaribacter sp. Hel1_85, designated as PHEL85d, is a Gram-negative, rod-shaped bacterium. This organism has a single replicon, which is a characteristic that can influence its genetic stability and replication processes. The genetic information for Polaribacter sp. Hel1_85 is accessible under the accession JPDS00000000.1. Gram-negative bacteria, such as Polaribacter sp. Hel1_85, are known for their unique cell wall structure, which includes a thin peptidoglycan layer surrounded by an outer membrane containing lipopolysaccharides. This structural feature often contributes to their resilience in varied environments, including marine ecosystems where many members of the Polaribacter genus are typically found. The ecological role of Polaribacter sp. Hel1_85 may be significant in its native habitat, likely contributing to biogeochemical cycles, particularly in marine environments. Polaribacter species are often associated with organic matter degradation, indicating that PHEL85d may play a role in nutrient recycling. Understanding this bacterium's traits and functions could provide insights into its ecological contributions and the overall microbial dynamics within its ecosystem.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyFlavobacteriaceae
GenusPolaribacter
SpeciesPolaribacter sp. Hel1_85
StrainPHEL85d

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Polaribacter sp. Hel1_85 PHEL85d
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Polaribacter sp. Hel1_85 PHEL85d, whole genome shotgun sequence.

Gene Summary

Adenine Count

1397194 bp

Thymine Count

1372323 bp

Guanine Count

566559 bp

Cytosine Count

577992 bp

Genome Length

3914068 bp

Protein-coding Genes

3411 genes

Non-Coding Genes

54 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
ntp pyrophosphohydrolase-like domain proteinPHEL85_3019Not AvailableNegative3361513 - 336189914701.6
short chain dehydrogenasePHEL85_3020Not AvailableNegative3361940 - 336266827542.8
hypothetical proteinPHEL85_3021Not AvailablePositive3362790 - 33629968013.27
dipeptidyl-peptidase iii, m49 familyPHEL85_3022Not AvailableNegative3363087 - 336511777014.0
dna-3-methyladenine glycosylasePHEL85_3023Not AvailableNegative3365299 - 336585621847.0
hypothetical proteinPHEL85_3024Not AvailablePositive3365954 - 336638816992.4
dihydrofolate reductasePHEL85_3025Not AvailableNegative3366381 - 336687518821.5
carbohydrate binding protein, cbm48 domain proteinPHEL85_3026Not AvailablePositive3367178 - 336747410877.8
thymidylate synthasePHEL85_3027Not AvailableNegative3367540 - 336836431395.3
nucleoside permease nupcPHEL85_3028Not AvailableNegative3368479 - 336988249372.2

Displaying genes 3001 – 3010 of 3465 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.