Marine Group I thaumarchaeote SCGC RSA3 SCCGRSA3_107_1148

Kingdom

Thermoproteati

Phylum

Nitrososphaerota

Class

Order

Family

Genus

Description

Marine Group I thaumarchaeote SCGC RSA3 (accession JOTD00000000.1) is characterized by possessing a singular replicon. This trait is significant as it indicates a streamlined genetic structure that may contribute to its adaptability and efficiency in marine environments. Thaumarchaeotes, including this particular group, are known for their ecological roles in biogeochemical cycles, particularly in the oxidation of ammonia, which is a critical process in marine nitrogen cycling. The unique genetic traits of SCGC RSA3 can provide insights into its functional capabilities within its ecosystem. As a member of the Marine Group I, it is likely to thrive in oligotrophic conditions typical of open ocean environments, where nutrient availability is limited. This group's adaptation mechanisms may involve specialized metabolic pathways that allow them to utilize available resources effectively. Understanding the genetics and metabolic functions of SCGC RSA3 enhances our comprehension of microbially driven processes in marine ecosystems. The presence of these organisms in the ocean plays a vital role in nutrient cycling, with implications for primary production and overall marine ecosystem health. By studying such archaea, we can gain better insights into the dynamics of marine food webs and the potential impacts of environmental changes on microbial communities.

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Marine Group I thaumarchaeote SCGC RSA3 SCCGRSA3_107_1148


Gene Summary

Adenine Count

605873 bp

Thymine Count

615646 bp

Guanine Count

313433 bp

Cytosine Count

316966 bp

Genome Length

1851930 bp

Protein-coding Genes

2412 genes

Non-Coding Genes

46 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
dna polymerase ii small subunit proteinSCCGRSA3_00001Not AvailableNegative1 - 2037923.73
integral membrane duf95 proteinSCCGRSA3_00002Not AvailablePositive314 - 69413635.6
integrase-recombinase y4qk proteinSCCGRSA3_00003Not AvailablePositive775 - 189042701.1
hypothetical proteinSCCGRSA3_00004Not AvailableNegative2004 - 22469779.5
hypothetical proteinSCCGRSA3_00005Not AvailableNegative2246 - 270417315.0
crispr-associated proteinSCCGRSA3_00006Not AvailablePositive2752 - 365133919.9
protein of unknown function duf83 proteinSCCGRSA3_00007Not AvailablePositive3714 - 444528358.1
hypothetical proteinSCCGRSA3_00008Not AvailablePositive4448 - 10666239346.0
hypothetical proteinSCCGRSA3_00009Not AvailablePositive10663 - 1209356043.1
modification methylase proteinSCCGRSA3_00010Not AvailableNegative12097 - 1349154060.9

Displaying genes 1 – 10 of 2458 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.