Marine Group I thaumarchaeote SCGC RSA3 SCCGRSA3_107_1148

Kingdom

Thermoproteati

Phylum

Nitrososphaerota

Class

Order

Family

Genus

Description

Marine Group I thaumarchaeote SCGC RSA3 (accession JOTD00000000.1) is characterized by possessing a singular replicon. This trait is significant as it indicates a streamlined genetic structure that may contribute to its adaptability and efficiency in marine environments. Thaumarchaeotes, including this particular group, are known for their ecological roles in biogeochemical cycles, particularly in the oxidation of ammonia, which is a critical process in marine nitrogen cycling. The unique genetic traits of SCGC RSA3 can provide insights into its functional capabilities within its ecosystem. As a member of the Marine Group I, it is likely to thrive in oligotrophic conditions typical of open ocean environments, where nutrient availability is limited. This group's adaptation mechanisms may involve specialized metabolic pathways that allow them to utilize available resources effectively. Understanding the genetics and metabolic functions of SCGC RSA3 enhances our comprehension of microbially driven processes in marine ecosystems. The presence of these organisms in the ocean plays a vital role in nutrient cycling, with implications for primary production and overall marine ecosystem health. By studying such archaea, we can gain better insights into the dynamics of marine food webs and the potential impacts of environmental changes on microbial communities.

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Marine Group I thaumarchaeote SCGC RSA3 SCCGRSA3_107_1148, whole

Gene Summary

Adenine Count

605873 bp

Thymine Count

615646 bp

Guanine Count

313433 bp

Cytosine Count

316966 bp

Genome Length

1851930 bp

Protein-coding Genes

2412 genes

Non-Coding Genes

46 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
2-hydroxymuconate tautomerase proteinSCCGRSA3_01547Not AvailableNegative1064394 - 10645706665.01
putative rhomboid protease ydca proteinSCCGRSA3_01548Not AvailableNegative1064604 - 106536228033.7
hypothetical proteinSCCGRSA3_01549Not AvailablePositive1065571 - 106612521072.8
hypothetical proteinSCCGRSA3_01550Not AvailablePositive1066412 - 10665585641.12
hypothetical proteinSCCGRSA3_01551Not AvailablePositive1066624 - 10668488690.55
hypothetical proteinSCCGRSA3_01552Not AvailablePositive1066896 - 10670425797.03
hypothetical proteinSCCGRSA3_01553Not AvailablePositive1067039 - 10671976809.18
hypothetical proteinSCCGRSA3_01554Not AvailablePositive1067194 - 106842946829.9
hpaii very short patch repair endonuclease proteinSCCGRSA3_01555Not AvailableNegative1068503 - 106890716488.2
modification methylase hphia proteinSCCGRSA3_01556Not AvailableNegative1068912 - 107011445754.4

Displaying genes 1421 – 1430 of 2458 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.