Escherichia coli 1-250-04_S3_C2

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Escherichia

Description

Escherichia coli strain 1-250-04_S3_C2 is a Gram-negative, rod-shaped bacterium known for its versatility in various environments. This strain is a facultative anaerobe, meaning it can thrive in both aerobic and anaerobic conditions. It typically resides in host-associated habitats, indicating its potential role in the microbiota of various organisms, including humans. The cell arrangement of E. coli 1-250-04_S3_C2 includes pairs and singles, which is characteristic of many E. coli strains. This bacterium possesses flagella, granting it mobility, which can be advantageous for navigating its environment and colonizing hosts. It has an optimal growth temperature of 37°C, placing it within the mesophilic temperature range, suitable for growth in warm-blooded hosts. E. coli 1-250-04_S3_C2 contains a single replicon and has a double membrane structure, consistent with its classification as a Gram-negative bacterium. It is described as free-living, indicating it can survive independently of a host, although its habitat suggests a close association with living organisms. Understanding the characteristics of E. coli 1-250-04_S3_C2 highlights its adaptive nature and ecological roles. Its ability to thrive in diverse environments, coupled with its mobility and facultative anaerobic metabolism, suggests it may play significant roles in nutrient cycling and microbial interactions within host-associated ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEscherichia
SpeciesEscherichia coli
Strain1-250-04_S3_C2

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Escherichia coli 1-250-04_S3_C2
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Escherichia coli 1-250-04_S3_C2


Gene Summary

Adenine Count

1305175 bp

Thymine Count

1305533 bp

Guanine Count

1351610 bp

Cytosine Count

1355597 bp

Genome Length

5317915 bp

Protein-coding Genes

5173 genes

Non-Coding Genes

528 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
Transposase is1AC28_0270Not AvailableNegative266334 - 2665588338.16
Transcriptional regulatorAC28_0271Not AvailableNegative266761 - 26716514830.5
Dna-binding proteinAC28_0272Not AvailablePositive267464 - 2676677371.28
Hypothetical proteinAC28_0273Not AvailablePositive267689 - 26803913126.4
Hypothetical proteinAC28_0274Not AvailablePositive268050 - 26832810405.4
Dna modification methyltransferaseAC28_0275Not AvailablePositive268340 - 2685829045.64
Membrane proteinAC28_0276Not AvailablePositive268579 - 2686924228.49
Hypothetical proteinAC28_0277Not AvailablePositive268779 - 2689827944.49
hypothetical proteinAC28_0278Not AvailablePositive269306 - 26969514652.2
Replication proteinAC28_0279Not AvailablePositive269692 - 272532108207.0

Displaying genes 1 – 10 of 5701 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

4785 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002482,3-dihydroxy-3-methylbutanoateC5H10O4Chemical structure of 2,3-dihydroxy-3-methylbutanoate1756-18-9
Average134.1305Da
Monoisotopic134.0579088Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da

Displaying 1–10 of 4785 metabolites

Health Effects

No health effects information available for this bacterium.